Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2429 ATGCAGCAGCAGAGGTTAAGGCAGCAGCAGCATGCCATGATGCAGCACTCTCTCTACCACCACCCTGCCCTCCTCACTCCCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTCTATGTCGGCAACATTCATCCTCAGGTTTCGGAATCCCTTCTCCAAGAGCTTTTTGCAAGTGCAGGTGCCCTTGAAGGATGCAAGCTCATTAGGAAAGAGAAGTCATCCTATGGCTTTGTTGACTACTTTGATCGCAGTTCAGCTGCATTTGCCATTGTAACTCTCAATGGGAGGCACATTTTTGGGCAGCCTATTAAAGTTAACTGGGCATATGCTAGTAGCCAGAGAGAGGATACATCAGGTCACTTTAATATTTTTGTTGGCGACCTTAGTCCTGAGGTTACAGATGCAACATTGTTCGCTTGCTTCTCTGTATATCCTAGTTGCTCAGATGCCAGGGTAATGTGGGATCAGAAAACAGGCCGTTCCCGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCGCAAAGTGCCATCAATGATTTAACTGGAAAGTGGCTTGGAAGTAGACAGATACGCTGTAACTGGGCCACAAAAGGGGCTACTTCCAATGATGAAAAGCAGAGTTCGGATTCCAAAACTGTTGTGGAGTTAACTAGTGGAACATCTGAAGAAGGGCAGGAAGCAACCAGTGATGACGCACCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGGTTACTTCTGCTGATCTTCATCATCATTTTCATGCCCTTGGTGCTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACACATGCTGAAGCAGCTCTAGCTATACAGATGGGTAATGCTCGGATTTTGTTTGGCAAACCTATCAAGTGTTCGTGGGGTAGCAAGCCTACACCTCCGGGAACTGCCTCTACTCCTCTTCCCCTACCCACTTCTGCACATGTTCCTGGCATTTCACTTGCAGGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGCAAAATGGGTGGTGCACATGCCCTTATGCATCAGCAGGGTCAGCATGCCTTGAAGCAGGCAGCCATGGGAATGGGTGCTCCTGGTGCTGGTTATGATGCAGGATTCCAGGGTGTTGGGACTAACCAGCACCTAATGTACTATCAGTAA 1242 0.4758 MQQQRLRQQQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVSESLLQELFASAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGATSNDEKQSSDSKTVVELTSGTSEEGQEATSDDAPEKNPQYTTVYVGNLAPEVTSADLHHHFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPLPTSAHVPGISLAGLAAYERQMALSKMGGAHALMHQQGQHALKQAAMGMGAPGAGYDAGFQGVGTNQHLMYYQ* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2429 413 SUPERFAMILY RNA-binding domain, RBD 37 126 IPR035979 GO:0003676
Dod05g2429 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Dod05g2429 413 Gene3D - 232 332 IPR012677 -
Dod05g2429 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 122 IPR000504 GO:0003723
Dod05g2429 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 205 IPR000504 GO:0003723
Dod05g2429 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 322 IPR000504 GO:0003723
Dod05g2429 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 116 IPR000504 GO:0003723
Dod05g2429 413 Gene3D - 1 131 IPR012677 -
Dod05g2429 413 Gene3D - 132 231 IPR012677 -
Dod05g2429 413 CDD RRM3_TIA1_like 254 328 - -
Dod05g2429 413 SUPERFAMILY RNA-binding domain, RBD 126 214 IPR035979 GO:0003676
Dod05g2429 413 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 409 - -
Dod05g2429 413 CDD RRM2_PUB1 134 208 - -
Dod05g2429 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 409 - -
Dod05g2429 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 328 IPR000504 GO:0003723
Dod05g2429 413 SUPERFAMILY RNA-binding domain, RBD 245 332 IPR035979 GO:0003676
Dod05g2429 413 SMART rrm1_1 134 207 IPR000504 GO:0003723
Dod05g2429 413 SMART rrm1_1 255 324 IPR000504 GO:0003723
Dod05g2429 413 SMART rrm1_1 49 118 IPR000504 GO:0003723
Dod05g2429 413 MobiDBLite consensus disorder prediction 211 251 - -
Dod05g2429 413 CDD RRM1_TIA1_like 50 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2429 Dod-Chr5 50576729 50582019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2429 49 322 Eukaryotic Initiation Factors Gene Family AT3G16380 26.117 9.38e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2429 K13201 - gmx:100813736 763.451