Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2402 ATGATGAATGGAAGGAACAGGTTCCCTTTCACTCCATCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCACCTGATCTTCTCTTCTCCATCAAGAGAAGCTACCTGGACTCTCCTCTTTCTTCAAGGCTCTTGCCTCACCAGCCTCAATTTGGGTGGAACTATTTGCAGATGGGGTTGGGAAGAAAAATAGACCCAGAGCCAGGTAGGTGCAGAAGAACTGATGGTAAGAAATGGAGGTGCTCGAAAGAGGCATACCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACAGCAACAACAAACACAGATGCCCCAACAACACCAACACCTACAATCTTGTCAATCACCAAAAATAGCCCTGCACTAACGCCAACCACTACTCACTCTCTCTCACCTCTGACTACATCCCTGTCCTCTCATGACACACCCTACCACCACCACCACCACCAGCAACACCCTCCTTCTTCTCCCTATGCTTCCCATCTTCACCACTCCTTCCTCTACCATCACCAACCTTCTTCAAGGTCCAATGCTTTGTCATTTCAAGACAACAACAGTGCTCCCTTGTTCCTTGACACTGGTTCTTGCTCCCAGAATAACAACATCGAGTGCAGGGACAGATATGTTTATGGGCTGAAAGAAGAGGTGGATGAACACGCTTTCTTCACCGAACCTTCTGGAACTATGAGGAGCTTCTCTGCTTCCACCATGGATGATTCATGGCAGCTCACACCACTCACTATAAGCTCCTCATCCTCTTCGAAACAGAGGAGCTGCTCTGGTTTGTCCAATGAGAACGAGTACTCCTACTTGCAACTTCATCACAGCCTCAGTGACAACTCAAAGCAGCCAGCCGAGCAAGATCAGGGTTGCTACATATCTGGCAATGACATCAAATGCGAAACATTCATGAAACTTGAGAAAGAAGAGCCTCAGAAAACCGTTCATCGGTTCTTTGATGAGTGGCCACCAAAGAGTAGAGGCTCGTGGCTTGACTTGGATGATAAATCATCCACAACCCAGCTTTCAATTTCCATTCCTGCATCTTCTCATGAGTTCACAGCTTTCAGTTCAAGAAACCAAAGAGATGGGTGA 1182 0.4721 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFSIKRSYLDSPLSSRLLPHQPQFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTATTNTDAPTTPTPTILSITKNSPALTPTTTHSLSPLTTSLSSHDTPYHHHHHQQHPPSSPYASHLHHSFLYHHQPSSRSNALSFQDNNSAPLFLDTGSCSQNNNIECRDRYVYGLKEEVDEHAFFTEPSGTMRSFSASTMDDSWQLTPLTISSSSSSKQRSCSGLSNENEYSYLQLHHSLSDNSKQPAEQDQGCYISGNDIKCETFMKLEKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPASSHEFTAFSSRNQRDG* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2402 393 MobiDBLite consensus disorder prediction 119 169 - -
Dod05g2402 393 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dod05g2402 393 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dod05g2402 393 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dod05g2402 393 PANTHER - 4 369 IPR031137 GO:0005634|GO:0006351|GO:0032502
Dod05g2402 393 MobiDBLite consensus disorder prediction 106 190 - -
Dod05g2402 393 PANTHER GROWTH-REGULATING FACTOR 5 4 369 - -
Dod05g2402 393 Pfam WRC 77 119 IPR014977 -
Dod05g2402 393 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2402 Dod-Chr5 50280615 50282852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2402 7 119 GRF Transcription Factor Family AT3G13960 74.336 2.10e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Dod05g2402 WRC 8.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2402 - - gmx:100783524 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2402 05 50280615 50282852 Dod05g2402 05 50280615 50282852 ECH
Dod05g2402 05 50280615 50282852 Dod03g1566 03 21363794 21365482 PCT