Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2399 ATGGGGAGAAGCCCTTGTTGCCCAAAGGAGGGCCTGAACCGTGGTGCTTGGACAGCTCATGAAGACAAGGTCCTCAAAGACTACATTAGGGTCCATGGCGAAGGAAGGTGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGCTGTAGACTTCGATGGTTGAATTATCTCAGACCAGACATTAAGAGAGGCAATATATCCTCAGATGAGGAAGAACTTATCATTAGGCTTCACAAGCTCCTGGGAAACAGATGGTCTCTAATAGCAGGGAGGCTTCCGGGGCGTACAGACAATGAAATAAAGAACTACTGGAATACCAATTTGGGTAAAAAGGTTAAAGATCATACTAACCAAACCAGCTCCTCTTCCCGTATGCGCTGTTCTCCTCAAAAAGATGAAAAGAGCACTGAGAATCCAAAGCCCCAAGCAAAGGTCACTGTCACTCCCTCACCTTCCTCACCAGCTCCTCCCAAGACAGATTCCCATGTTGTCCGTACAAAGGCTACCAAGTGCTCCAAGGTAATACTCATAAACCCACCAGTCCCTCCCTCACCAATGCAATTGCAGAAACATTCCAATACCCTGACAGAACCAGAAGTTTTGGACGCTCAGGCTGTTGCCAACAAAGCCAATGATTCATTAAGCAATCAGAAAGAATCCAGTGTGTACAACAATGGGTTTCTTTCGTTCCTGAGTGAACAGAAAGAGCTCTCATCAGATTTGCTCCTGGATTTTGACATTGTTGGGGATCTTTGCTTGTCTGATCTTCTCAACTCGTCAGATTTCCCAGACATGTGCGGTCTCAGTTACATTAACAACAACAGCAACGACGAGCTATCATCGCCTTGTTCGGACCAACCTGCAGATCCGATGTTCTCTGACGAGATTTTCAAGGATTGGACGCACACCAATTTTGCTCAAGACTCAAATTTGTCAAACGACCTTCGTTCTTTCACTTCGGTCCTTGAGTCCAGTGAGGAAGGAATGAATGACTAA 1008 0.4573 MGRSPCCPKEGLNRGAWTAHEDKVLKDYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDHTNQTSSSSRMRCSPQKDEKSTENPKPQAKVTVTPSPSSPAPPKTDSHVVRTKATKCSKVILINPPVPPSPMQLQKHSNTLTEPEVLDAQAVANKANDSLSNQKESSVYNNGFLSFLSEQKELSSDLLLDFDIVGDLCLSDLLNSSDFPDMCGLSYINNNSNDELSSPCSDQPADPMFSDEIFKDWTHTNFAQDSNLSNDLRSFTSVLESSEEGMND* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2399 335 Gene3D - 14 66 - -
Dod05g2399 335 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod05g2399 335 CDD SANT 16 61 IPR001005 -
Dod05g2399 335 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod05g2399 335 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod05g2399 335 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod05g2399 335 SMART sant 66 114 IPR001005 -
Dod05g2399 335 SMART sant 13 63 IPR001005 -
Dod05g2399 335 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dod05g2399 335 MobiDBLite consensus disorder prediction 115 168 - -
Dod05g2399 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod05g2399 335 CDD SANT 71 112 IPR001005 -
Dod05g2399 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod05g2399 335 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 287 - -
Dod05g2399 335 PANTHER TRANSCRIPTION FACTOR TT2 1 287 - -
Dod05g2399 335 MobiDBLite consensus disorder prediction 115 130 - -
Dod05g2399 335 Gene3D - 71 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2399 Dod-Chr5 50260166 50262035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2399 1 119 MYB Transcription Factor Family AT4G09460 72.269 1.00e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g2399 Myb_DNA-binding 8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2399 K09422 - gmx:100802704 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2399 05 50260166 50262035 Dod06g2199 06 46861747 46864393 ECH
Dod05g2399 05 50260166 50262035 Dod05g2399 05 50260166 50262035 ECH