Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2393 ATGGCGACCCAAATGAGCAAGAAGAGAAAGTTCGTAGCGGACGGAGTTTTCTTCGCAGAGCTGAACGAGGTTCTGACCAGAGAGCTCGCCGAGGATGGTTACTCAGGTGTTGAGGTTAGGGTTACCCCAATGCGGACCGAGATCATTATCAGAGCTACCAGAACCCAAGCTGTACTTGGTGAGAAGGGAAGAAGAATCAGGGAGCTAACATCGGTGGTGCAGAAGAGATTCAAGTTTCCTGAGAATAGTGTGGAGTTATATGCTGAAAAGGTCAACAACAGGGGCCTTTGCGCTATTGCCCAAGCTGAGTCTCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTAAGGAGGGCCTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTGGTGCAAAAGGGTGTGAGGTTATTGTTAGTGGTAAATTGAGGGCTCAGCGAGCCAAATCCATGAAGTTCAAGGATGGGTACATGATTTCCTCAGGGCAACCTGTCAAGGATTACATTGACTCTGCAGTAAGACATGTACTCCTTAGACAGGGTGTTCTTGGTATCAAGGTCAAAATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCCAAAACTCCCCTCCCTGATATTGTCACCATTCACCCTCCAAAGGATGAAGAAGAATACACCAGGCCTGCTGCCGTGCTGGCAAATGATATTGAAGTCCCTGTGGCTTGA 708 0.4802 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHPPKDEEEYTRPAAVLANDIEVPVA* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2393 235 CDD 40S_S3_KH 15 95 - -
Dod05g2393 235 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Dod05g2393 235 Pfam KH domain 20 93 IPR004044 GO:0003723
Dod05g2393 235 Gene3D - 1 91 IPR015946 -
Dod05g2393 235 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Dod05g2393 235 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 232 - -
Dod05g2393 235 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Dod05g2393 235 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Dod05g2393 235 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Dod05g2393 235 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Dod05g2393 235 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 232 - -
Dod05g2393 235 Gene3D - 93 219 IPR036419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2393 Dod-Chr5 50185036 50187338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2393 1 235 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.809 1.41e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2393 K02985 - gmx:100795581 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2393 05 50185036 50187338 Dod05g2393 05 50185036 50187338 ECH