Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2389 ATGAGAACTCGCAGAGGAACCTGCTCTCAAGCTTCAAGTACAAGAAAGAAGAAGGAGCAAAAAAAGAAGGTGGCTGGTGCAAAAGATAGTCATCATGAAGATGAATATTATTATGAGTGCCCGGTTTGCTTATCGGTTTTTGAAGAAGGGGAGGAGGTAAGGAAGCTACCAAGGTGCAAGCACTCTTTCCATGTTCAATGCATAGACATGTGGCTTTACTCCCACTTCGATTGCCCAGTTTGTAGGACACCGGTAGGGCCTTTCTGCCACCGTTTTCAGCCGGAGAATTTCAGCGAGGGGTTGCCGGAATCCGGTGGTGGTGGTGGTGGTGTCTGA 336 0.4821 MRTRRGTCSQASSTRKKKEQKKKVAGAKDSHHEDEYYYECPVCLSVFEEGEEVRKLPRCKHSFHVQCIDMWLYSHFDCPVCRTPVGPFCHRFQPENFSEGLPESGGGGGGV* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2389 111 ProSiteProfiles Zinc finger RING-type profile. 40 82 IPR001841 -
Dod05g2389 111 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 12 93 - -
Dod05g2389 111 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 93 IPR044675 -
Dod05g2389 111 Pfam Ring finger domain 39 82 IPR001841 -
Dod05g2389 111 SUPERFAMILY RING/U-box 30 89 - -
Dod05g2389 111 SMART ring_2 40 81 IPR001841 -
Dod05g2389 111 MobiDBLite consensus disorder prediction 1 33 - -
Dod05g2389 111 CDD RING-H2_EL5_like 39 82 - -
Dod05g2389 111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2389 Dod-Chr5 50163662 50164562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2389 11 82 C3H Transcription Factor Family AT3G10910 47.945 2.14e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2389 - - aprc:113852327 130.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2389 05 50163662 50164562 Dod05g2389 05 50163662 50164562 ECH