Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2383 ATGAAGCCGTTCCTCTTGTTGAATCATCCTGATACTGAGTTCAATTGTGCACAAGTCGATTGTAGTCACTCAATGGCTCGTGCTCCTTATCCTTATGGTGATCCTTTTTTCAGTGGTTCATTCGTTACTTATGGACCACAGGCTGTTACTCAACCCCCAGTGTTACCCCAAATGCTGGGATTAACATCCCCCAGAATTGCATTACCACTTGATCTTGCTGAAGATGGGCCCATTTATGTCAACGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAGCTTATCAAAAGTCGCAAGCCATATCTTCACGAGTCCCGCCATCGTCATGCTTTGAATAGGGTTAGGGGATCTGGGGGACGCTTTCTCAGCGCTAAACAGCTTCAACTGTCTAATGCAGAACTTGTCAACGGCGCCCATTCGGGCTCAAAACCGATCAATTTATATCAAAAGAAAGATGCATCAGAGGTAGAAAGTCATCCTGCAAGAACTGGAGAAAATGCATCTTCCATCACAACCTGCTCTGACCTAACAAGTTTGTCCAGCAACAGTGTCAATTACAGGCAGCCTGAACACAAGTTCTTTGGGAATTCCCCAAACATGGGTGGAGTATCACAATGCAGTGGGGGACTCACCTTTGGTGGTTGA 675 0.4578 MKPFLLLNHPDTEFNCAQVDCSHSMARAPYPYGDPFFSGSFVTYGPQAVTQPPVLPQMLGLTSPRIALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLQLSNAELVNGAHSGSKPINLYQKKDASEVESHPARTGENASSITTCSDLTSLSSNSVNYRQPEHKFFGNSPNMGGVSQCSGGLTFGG* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2383 224 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Dod05g2383 224 Gene3D - 74 136 - -
Dod05g2383 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 216 - -
Dod05g2383 224 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Dod05g2383 224 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Dod05g2383 224 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 216 IPR001289 GO:0003700|GO:0006355
Dod05g2383 224 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Dod05g2383 224 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Dod05g2383 224 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2383 Dod-Chr5 50125868 50129523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2383 45 147 CCAAT-HAP2 Transcription Factor Family AT1G54160 60.000 7.77e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dod05g2383 CBFB_NFYA 2.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2383 K08064 - gmx:100792905 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2383 05 50125868 50129523 Dod05g2383 05 50125868 50129523 ECH