Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2374 ATGAAGAAGGGAGTGCTGGGTCCCAGCCTCAAACTCGCTGTCCCTGCATCTGATCAAGCTTCTTTTTCCAAGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTCAGAGTTGTATCTCAGAGTGAAGTTGAAGCTCCACCCCCAATCAAGCCAATAGACAACCAGTTAAGTTTGGCAGACGTAGACACAATAAAAGTGGTTGGAAAAGGAAATGGAGGGGTAGTGCAGTTGGTGCAACATAAATGGACTAGTCAGTTTTTCGCATTAAAGGTAATTCAAATGAATATCGAGGAGTCTATGCGCAAGCAGATAGCGCAAGAGCTGAAAATTAATCAATCAGCACAATGTCCTTATGTTGTGGTTTGCTATCAGTCATTCTACGATAATGGTGTTATATCAATCATCTTAGAGTACATGGATGGAGGGTCCTTAGCAGATCTTCTGAAGAAAGTTAAAACCATTCCGGAGTCTTATCTTGCAGCCATCTGTAGGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAAACATATTATCCACAGAGACTTAAAACCATCAAATTTGCTGATAAATCATAGAGGTGAAGTGAAAATTACTGACTTTGGTGTGAGTGCAATTTTGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAAAGGATCAATGGATATGGAAGCCAGCATGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTGATACTGCTTGAGTGTGCTTTGGGGCGGTTTCCATATACACCACCAGATCAAAGTGAGAGATGGGAAAGTATTTTTGAGCTTATTGAAACCATTGTTGATCAACCTCCTCCTAGTGCTCCATCTGAACAATTTTCTACAGAATTTTGCTCATTTATCTCAGCATGCTTACAGAAAGACCCAGGGAATAGACTGTCGGCTCAGGAACTTATGAGACATCCTTTTATCGGCATGTATGAGGACTTCGATGTGGATCTTGCAGCTTTCTTCTCCAATGCAGGATCTCCTCTTGCTACCTTATAA 1077 0.415 MKKGVLGPSLKLAVPASDQASFSKFLTESGTFKDGDLLVNRDGVRVVSQSEVEAPPPIKPIDNQLSLADVDTIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQSAQCPYVVVCYQSFYDNGVISIILEYMDGGSLADLLKKVKTIPESYLAAICRQVLKGLMYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAILESTSGQANTFIGTYNYMSPERINGYGSQHGYNYKSDIWSLGLILLECALGRFPYTPPDQSERWESIFELIETIVDQPPPSAPSEQFSTEFCSFISACLQKDPGNRLSAQELMRHPFIGMYEDFDVDLAAFFSNAGSPLATL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2374 358 SUPERFAMILY Protein kinase-like (PK-like) 71 338 IPR011009 -
Dod05g2374 358 CDD PKc_MAPKK_plant_like 85 338 - -
Dod05g2374 358 Gene3D Transferase(Phosphotransferase) domain 1 150 353 - -
Dod05g2374 358 PANTHER MAP KINASE KINASE 1 358 - -
Dod05g2374 358 SMART serkin_6 70 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2374 358 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 358 - -
Dod05g2374 358 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Dod05g2374 358 ProSiteProfiles Protein kinase domain profile. 70 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2374 358 Pfam Protein kinase domain 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2374 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Dod05g2374 358 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2374 Dod-Chr5 50044846 50050220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2374 1 329 MAP Kinase Kinase Gene Family AT4G29810 68.935 2.07e-175 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Dod05g2374 Pkinase 4.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2374 K20603 - gmx:100789734 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2374 05 50044846 50050220 Dod05g2374 05 50044846 50050220 ECH
Dod05g2374 05 50044846 50050220 Dod03g1535 03 20902558 20908376 PCT