Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2366 ATGTGCGGTGACGCGACGAACTGGGGCGAGAATGCGTACAGGGAAAGCGTGCTGAAGGAGAGGGAGATTGAAACGCGAACCGTTTTCCGAACAGCCTGGGCTCCTCTCCTTAACCCTAACCCTAACCCTCACACTCTTCTCGTCGCCTCCAGCGATGGTTCCATCGCCTCCTACTCCATCCCTTCCTGCATCTCCTACCCCCATATGCAGCGGCCATTTACCAATACAGACAGATTATTGGCTGAACCAGATTGCTTCTTTCAAGGGCATGATGGACCTGCTTATGATCTCAAATTCTACGGTGATGGCCAAGATGCTCTCTTGCTGAGTTGTGGTGATGATGGCCGGATTCGAGGATGGAGATGGAAGGAACTTGCAACCTCAAGTGATTCTGTTTCTTCTCAAGGAGACGATATCAAGCCTATAATTGACCTGGTGAATCCTCAACACAAAGGTCCTTGGGGTGCACTTTCACCTATTCCTGAGAATAATGCTATTGCTGTTAATTCACAGGGGGGATCTGTTTTCTCTGCTTCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTTTTTAAGGGGCACTTGGACTACTTGCATTGTATAGTTGCTCGCAACTCATCCAGTCAGATCATAACTGGTTCAGAGGACAGAACTGCAAGAATTTGGGATTGCAAAAGTGGAAAGTGTATCAAAGTGATTGATCCAGCAAAAGATTTGATGTTAAAAGGATCTGTTTCATGGGTTGGTTGTGTTGCTTTAGATGCAAGTGAGAGCTGGCTGGCTTGCAGTAGTGGACGGAATATATCTCTTTGGAACCTTCTTGCTTCAGAGTGCATATCAAGGATTTCAACTCGTGCTTCTGTACAGGACATGTCATTCGACAATAATCAAATTTTGGCAGTTGGTGCAGATCCTCTTCTCAATCGCTTTGACATGAACGGTGCGATCCTTTCACAAATACAGTGTGCTCCTCCATCAGCTTTTTCTATCTCCTTGCATCCATCAGGGGTTGTGGCAGTTGGAGGTTATGGATGTCTTGTGGATGTTATCTCACAATTTGGCAGCCATATGTGCACATTTCATTGCAAGTGCATTTAA 1119 0.4576 MCGDATNWGENAYRESVLKEREIETRTVFRTAWAPLLNPNPNPHTLLVASSDGSIASYSIPSCISYPHMQRPFTNTDRLLAEPDCFFQGHDGPAYDLKFYGDGQDALLLSCGDDGRIRGWRWKELATSSDSVSSQGDDIKPIIDLVNPQHKGPWGALSPIPENNAIAVNSQGGSVFSASGDSCAYCWDVETGKVKMVFKGHLDYLHCIVARNSSSQIITGSEDRTARIWDCKSGKCIKVIDPAKDLMLKGSVSWVGCVALDASESWLACSSGRNISLWNLLASECISRISTRASVQDMSFDNNQILAVGADPLLNRFDMNGAILSQIQCAPPSAFSISLHPSGVVAVGGYGCLVDVISQFGSHMCTFHCKCI* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2366 372 SMART WD40_4 282 318 IPR001680 GO:0005515
Dod05g2366 372 SMART WD40_4 233 279 IPR001680 GO:0005515
Dod05g2366 372 SMART WD40_4 14 59 IPR001680 GO:0005515
Dod05g2366 372 SMART WD40_4 138 188 IPR001680 GO:0005515
Dod05g2366 372 SMART WD40_4 80 121 IPR001680 GO:0005515
Dod05g2366 372 SMART WD40_4 191 230 IPR001680 GO:0005515
Dod05g2366 372 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 10 369 IPR042626 -
Dod05g2366 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Dod05g2366 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 230 - -
Dod05g2366 372 Gene3D - 154 367 IPR015943 GO:0005515
Dod05g2366 372 SUPERFAMILY WD40 repeat-like 37 359 IPR036322 GO:0005515
Dod05g2366 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 87 120 IPR001680 GO:0005515
Dod05g2366 372 Gene3D - 11 153 IPR015943 GO:0005515
Dod05g2366 372 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
Dod05g2366 372 Pfam WD domain, G-beta repeat 248 279 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2366 166 235 Eukaryotic Initiation Factors Gene Family AT2G46280 35.714 6.98e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2366 K13175 K03257 gmx:100820024 638.262