Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2355 ATGGATGGCGTCTTCTCCCTCCCTGAAACCACCAGAGCTGAGTTTCTCCACTCTCTAGTGCAGTCTTTTGGCTGCGCTTACATTTGTCTGTGGCAGCCATATGATTCCCCTTTATCTAATCGTTTGTTCTTCTTGGATGGAGTCTACAACAACCAATCAAGCTCTTCTTTGGGGAGCATTAGTGCAGCTGCTGAAAGGCTTTTTAATTTATATCAGCGTCTATCATTTGTTGTAAATGATGACCATGTTCCTGGACTTGCTTTCAGGAACAACATGCCCTACCTAGAGCTGCAACAGTTGGATCTTCTAAAACTTTCATCCACAATAATACAAACACAATTCTATCAGGCTGCTGTTTTCATGGGATGCAACAAAGGGGAAATTGAGTTTGGGTTCTCGACGATACAAATTGACATTCAAACAGCACTTGGTACTTTATTTCCAGAAGATTTTTCTAGACTCTCCCAACGACCAATTGATCAGAATCCACCTTCATCATCTTCATCTTCTTTGAGGACACTATCTACAGGTAGCCATAGCCCTGAATGTTCATCCTTATTGTTCAGTATTCCAGGCACTTCGCAATCCTACTTTCCTGAAACACTTGGTGTGGTTCCAACATTATCACAATTACCTGTGCCAAACACACAAACCAGCCCACTACAACCAATGCAAACCTTATCTCAAATCCTTCCAAGTCATTTCCCCTCACCGGAGGCTGAACAAGATGCAATGGTAAAAGCATTCATTCATGTTATATCTTCACCTCCTTCTTCAACTTCTTATCATCAGCAGCAGCAGCATCAAAATTTGCCTCATTCTTTTGTGGCACATCCAGAAGCTAGTGCTTTCAAGATGTATTATAGGCCAGATATAACACCCCAAATGGGGTCCAATAATTCACGTTGGCAAAGCCTAATGAAGAGATCAATTGCATTCTCAAGATGGTTACATTCTCAAACGAGAAAACGGTTTCAATTTCAAGCAGCACGCTCCAGCGCTAGTTGCCAGCTGCATACGATATCAGAACGAAGAAGGCGTGAGAAACTCAATGGGAATTTTGAGGCACTCAGGGCACTGCTTCCTCCAGGAACTAAGAAACACAAAGCTTCCATCCTTACAGCAGCAAAGGAGACATTGAAATATTTGATTGATGACATTGAAAAGCTTAACATAAGGAACCAGCAGTTGACGACACTTTTGTCATTCAAAGAAGCTAGTATTCAAGAAACTAATGTTAGCTACTCAAATGAGAGATTGAATGTTCGGATTACAGATGTGCCGGGACCTAGTTCATCACAAGAGAGAATGGTGATCAACTTGCAAGTGATTGTGAGAGGAGAAAGTTCTCAATCTGATATAGTGATTCGCTTATTGGAATTCTTGAAACGGGATCAGAACGTTAGCTTGATTTCCCTGGGCACAAACACCCATATTACAGAAGGGACAGCCATTAATCAAATAAACTTCAGACTGAGGATTCTTGAGGGAAGTGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCAGACCTAACACATTGA 1557 0.42 MDGVFSLPETTRAEFLHSLVQSFGCAYICLWQPYDSPLSNRLFFLDGVYNNQSSSSLGSISAAAERLFNLYQRLSFVVNDDHVPGLAFRNNMPYLELQQLDLLKLSSTIIQTQFYQAAVFMGCNKGEIEFGFSTIQIDIQTALGTLFPEDFSRLSQRPIDQNPPSSSSSSLRTLSTGSHSPECSSLLFSIPGTSQSYFPETLGVVPTLSQLPVPNTQTSPLQPMQTLSQILPSHFPSPEAEQDAMVKAFIHVISSPPSSTSYHQQQQHQNLPHSFVAHPEASAFKMYYRPDITPQMGSNNSRWQSLMKRSIAFSRWLHSQTRKRFQFQAARSSASCQLHTISERRRREKLNGNFEALRALLPPGTKKHKASILTAAKETLKYLIDDIEKLNIRNQQLTTLLSFKEASIQETNVSYSNERLNVRITDVPGPSSSQERMVINLQVIVRGESSQSDIVIRLLEFLKRDQNVSLISLGTNTHITEGTAINQINFRLRILEGSEWDESAFQEAVRRVVADLTH* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2355 518 Pfam Helix-loop-helix DNA-binding domain 336 383 IPR011598 GO:0046983
Dod05g2355 518 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 516 IPR044658 -
Dod05g2355 518 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 516 - -
Dod05g2355 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Dod05g2355 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 399 IPR036638 GO:0046983
Dod05g2355 518 CDD bHLH_AtbHLH_like 339 390 IPR045239 -
Dod05g2355 518 MobiDBLite consensus disorder prediction 155 177 - -
Dod05g2355 518 Gene3D - 335 407 IPR036638 GO:0046983
Dod05g2355 518 SMART finulus 340 389 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2355 Dod-Chr5 49855510 49860578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2355 1 518 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.407 1.76e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g2355 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2355 - - gmx:100807098 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2355 05 49855510 49860578 Dod05g2355 05 49855510 49860578 ECH
Dod05g2355 05 49855510 49860578 Dod03g1506 03 20559970 20564506 PCT