Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2344 ATGTCCTACGTGGAAGGCCGCTCCCACATTCCCCTCCCTACTTACTTCATCGGCGACTACGGCGTCGGTGCTCCCAAAGTGTTGTTGGCAGCTTCCAAGGAATCCGCCAACCGTGGTTTCAAGATGGACGGCCTCAGAGTCTGCGACAATTTGTTTTGGTTGAAAGGCAGTGGCAAATTCTCCCTCTTCGGGCTGTCTGTGGCCTATTTGTCTGGTAAGAAGCCATCAGATGGTCAACAGTTTGGGACTTACAGTCAAGACGATGTTGATGCTTTGCGAGCCATAGCTGAGGAGCCTGGGGTTGTTGACTTGTTCTTCACTAACGAATGGCCAACTGGGGTGACAAATAGAGCAGCTGCTTCGGACATTCCTGCTGGATTCTCAGATTCCATAGGCAGCGATCCAACCATATCAGAGTTGGTACAAGAGATTAAGCCTCGATATCACATTGCAGGCACCAAAGACATATACTATGCCCGTGAACCATATTCCAATGTTGATGCTGTACATGTGACTCGTTTCATAGGGCTTGCTTCTGTTGGAAACAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCCACTCCGGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAATCACTAACACCACCTTATCGCCATACACATTTGTGGAGAAAATAACTTCTCCAAAGGATGCTTCTAAGAGATCAAGTGGTGTTATCTCTGATGATCAATATTGGAGGTATGATGTTTCTCAAAAGCGACGCAAAAATGATGCTGGAGATGGGGATAGGATATGCTTCAAATTTGTAACTTCTGGTTCTTGTCCACGAGGAGAGAAGTGCAATTTTTGGCATGATATGGATGCAAGAGAACAGTATATGAGAGGTGTTTGCATTGACTTCTTAATCAAGAAAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGTTTTCAGGAGGAAGATGATAGGCATCCTGCCAGGCGGCCAGGTTCTGAAAATACTAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCTAACGTGGAGTCTCATTTGATCATAAGCCTCGGAGAAAATTACTACTTGGCACTTGCTAAAGGTCAACTTGTTGAAGACCATGTGCTGATAATACCAATTGAGCATATGCGCAGTACCTTGTCTCTGTCATCAGAATCTGAAGTTGAACTATGTAGGTTTCAAAACAGTCTCAAGAGGTACTGCAAGAGCCAGGGAAAGGAAGTCGTCCTTTTTGAGTGGGCTTCCATACGCAGCACTCATGCCAATCTTCAGGCCATTCCTATTCCATCTTCCAAAGCAGTTATGGTTGAAAAAGTATTCAATTTAGCTGCACAAAAGTTGGGATTTAAATTTGAGTCTAAGAAATTTGATAGCATTTCTGATGGAAGAAAATTTCTGAAGACACAAGTTGATGGGAATTCAAGTTTGTTCTATGCTGAAGTCCCAGGAGGCACAATTCTGCTGCACCATGTTGAGGAGAAAGTGAGCTTTCCAGCCCAATTTGGACGTGAGGTCATGGCGGGGTTGCTTAATTTGGCAGACAATGCAAATTGGAGGAATCGCAAACATAGTAAAGAGGAAGAAATGAAAATCGTAGAAGATTTCAAGAGCCGATTTCAAGAATATGATCCAAGTAGTTAA 1656 0.4348 MSYVEGRSHIPLPTYFIGDYGVGAPKVLLAASKESANRGFKMDGLRVCDNLFWLKGSGKFSLFGLSVAYLSGKKPSDGQQFGTYSQDDVDALRAIAEEPGVVDLFFTNEWPTGVTNRAAASDIPAGFSDSIGSDPTISELVQEIKPRYHIAGTKDIYYAREPYSNVDAVHVTRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKITNTTLSPYTFVEKITSPKDASKRSSGVISDDQYWRYDVSQKRRKNDAGDGDRICFKFVTSGSCPRGEKCNFWHDMDAREQYMRGVCIDFLIKKKCERGPDCNFKHSFQEEDDRHPARRPGSENTRSKECWFCLSSPNVESHLIISLGENYYLALAKGQLVEDHVLIIPIEHMRSTLSLSSESEVELCRFQNSLKRYCKSQGKEVVLFEWASIRSTHANLQAIPIPSSKAVMVEKVFNLAAQKLGFKFESKKFDSISDGRKFLKTQVDGNSSLFYAEVPGGTILLHHVEEKVSFPAQFGREVMAGLLNLADNANWRNRKHSKEEEMKIVEDFKSRFQEYDPSS* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2344 551 Pfam Protein similar to CwfJ C-terminus 1 332 445 IPR006768 -
Dod05g2344 551 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 2 550 IPR040194 -
Dod05g2344 551 SUPERFAMILY HIT-like 336 409 IPR036265 -
Dod05g2344 551 SMART c3hfinal6 291 316 IPR000571 GO:0046872
Dod05g2344 551 SMART c3hfinal6 259 284 IPR000571 GO:0046872
Dod05g2344 551 ProSiteProfiles Zinc finger C3H1-type profile. 289 317 IPR000571 GO:0046872
Dod05g2344 551 SUPERFAMILY CCCH zinc finger 261 287 IPR036855 GO:0046872
Dod05g2344 551 PANTHER CWF19-LIKE PROTEIN 1 2 550 - -
Dod05g2344 551 CDD MPP_CWF19_N 102 180 - -
Dod05g2344 551 Gene3D - 246 318 - -
Dod05g2344 551 Gene3D - 332 452 IPR036265 -
Dod05g2344 551 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Dod05g2344 551 Pfam Protein similar to CwfJ C-terminus 2 459 548 IPR006767 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod05g2344 CwfJ_C_1 1.7e-36 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2344 K24939 - gmx:100782106 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2344 05 49708594 49713872 Dod05g2344 05 49708594 49713872 ECH