Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2336 ATGACACCAGCTTCTCGCCATTCAGTGTCTTCTCTTGTGCCTCTTGATCTTAACGAAGATCAAAACCATGAGCACTTCACTCCAAACCATCAACTCTCTTCATTTTCTTCTCTTTCATATCCAAGACTCTTCAACCCCCCAGATCAAGATCAAGATTGGGAACCAAAGCACTTACCAATTGATGAAAAGGCTGAGGTGATTATTCCTTCTAGTGGATCATCTTGGGATCCTTCAGCAGCAGCAAAAATGCACGAGAGCTGCAGTGGACTCAAGCTTTCTGTGTTGAAGAAAGAAGAAATTAAGGATGAAAATCTTGAAGCAGGAGTTGAGGATGGTTTTTCAGTGAAGTGGATGCCTTCAAAGATGAGGATGATGCGGAAGATGATGGCGTCGGATCAAACGGCCAGTTCTTATATAGCAGGCAACTCTATTCACAACTTTGAAGATCAACAGCAACCATTATTTTCACCTCTTGGAACTGAAAATAACACTAACAGCAGCAACAACTATTCAAACCACGGTAATATCACTGTTAGGGTTTGTTCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGAGTGGACCGAGAGGCCCCAAGTCACTTTGCAACGCCTGTGGGATACGACAAAGGAAGGCAAGGCGTGCCGCCGCCATGGCTGCAGCATCGGCAAACGGCACAATCCTCGTGGCCGCGGAGACTTCCATGAAGGGAAACAAGTTAGGGAACAAAGAGAAGAAGTCCAAAATTGAGTGTGCGCCACAGTTGAAAAAGAAGCGGAAGCTTGGAGTCGGAAGCAATCAATCTCAAGTTAGAAATAAGAAGTTAGGAGTCGAGGATTTGACATTAAGGTTAAGCAAGAATTTGGCTCTCCAACAAGTCTTCCCTCAGGACGAGATCAAGGAGGCTGCGATCCTGCTCATGGCTTTGTCTTATGGCCTTGTTCATGGATGA 954 0.456 MTPASRHSVSSLVPLDLNEDQNHEHFTPNHQLSSFSSLSYPRLFNPPDQDQDWEPKHLPIDEKAEVIIPSSGSSWDPSAAAKMHESCSGLKLSVLKKEEIKDENLEAGVEDGFSVKWMPSKMRMMRKMMASDQTASSYIAGNSIHNFEDQQQPLFSPLGTENNTNSSNNYSNHGNITVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAAMAAASANGTILVAAETSMKGNKLGNKEKKSKIECAPQLKKKRKLGVGSNQSQVRNKKLGVEDLTLRLSKNLALQQVFPQDEIKEAAILLMALSYGLVHG* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2336 317 Pfam GATA zinc finger 181 214 IPR000679 GO:0006355|GO:0043565
Dod05g2336 317 ProSiteProfiles GATA-type zinc finger domain profile. 179 211 IPR000679 GO:0006355|GO:0043565
Dod05g2336 317 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 317 - -
Dod05g2336 317 ProSitePatterns GATA-type zinc finger domain. 181 206 IPR000679 GO:0006355|GO:0043565
Dod05g2336 317 Gene3D - 177 275 IPR013088 GO:0006355|GO:0008270
Dod05g2336 317 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 177 215 - -
Dod05g2336 317 SMART GATA_3 175 228 IPR000679 GO:0006355|GO:0043565
Dod05g2336 317 CDD ZnF_GATA 180 208 IPR000679 GO:0006355|GO:0043565
Dod05g2336 317 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2336 Dod-Chr5 49612496 49614404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2336 90 317 C2C2-Gata Transcription Factor Family AT4G26150 39.764 2.59e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod05g2336 GATA 3.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2336 - - gmx:100810698 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2336 05 49612496 49614404 Dod05g2336 05 49612496 49614404 ECH
Dod05g2336 05 49612496 49614404 Dod03g1492 03 19900544 19902234 PCT