Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2324 ATGGAAGATGACGAGGAATGCATCACAGGGCTAAGCCTTGGATTGGGGACAGGAAGGGATGTGCCAAGAAAGGAGAAACAGAAAGTGAACAAGCCTGTGGCTTCCTTGGACCTACCCTTTGAGCTTTGTCCAGAAGATCATCATGAAGCCATTGATGAGCAGCCAGACAGATTCAGTTTGCAGAGTAGCGATGAGGGACACCACTACCCAAATGCAAAGAGTGATGACAACACCAAAAACAAGAACGGCATCAGAAAGAAACTGAGGCTCACAAAGGACCAATTGGCTATGCTTGAAAGCAGCTTCAAGCTCCATAACACTCTTAACTCAGCCCAGAAACAAGCACTTGCTGACCAGTTGAATTTAAAGACTCGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACGAAGCTGAAACAGACGGAGGTGGATTGCGAGTTCTTGAAAAGACGGTGTCAAAGCCTAAGCGACGAGAACCGAAGGCTGAAGAAGGAGTTGCAGGAACTACGTGCACTTAAAGCTGGAACATCGCCATTATACATTCAACTCTCCAAAGCCGCAACTCTGACGACCGTGTGTTCTTCGTGCGAGAAAGTAGTAAAGCCCGAATGA 618 0.4676 MEDDEECITGLSLGLGTGRDVPRKEKQKVNKPVASLDLPFELCPEDHHEAIDEQPDRFSLQSSDEGHHYPNAKSDDNTKNKNGIRKKLRLTKDQLAMLESSFKLHNTLNSAQKQALADQLNLKTRQIEVWFQNRRARTKLKQTEVDCEFLKRRCQSLSDENRRLKKELQELRALKAGTSPLYIQLSKAATLTTVCSSCEKVVKPE* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2324 205 SMART halz 141 184 IPR003106 GO:0006355|GO:0043565
Dod05g2324 205 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Dod05g2324 205 Gene3D - 66 146 - -
Dod05g2324 205 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 9 201 - -
Dod05g2324 205 Pfam Homeodomain 85 139 IPR001356 GO:0003677
Dod05g2324 205 Coils Coil 133 177 - -
Dod05g2324 205 CDD homeodomain 85 142 IPR001356 GO:0003677
Dod05g2324 205 SUPERFAMILY Homeodomain-like 67 142 IPR009057 -
Dod05g2324 205 PANTHER - 9 201 - -
Dod05g2324 205 Pfam Homeobox associated leucine zipper 141 175 IPR003106 GO:0006355|GO:0043565
Dod05g2324 205 SMART HOX_1 83 145 IPR001356 GO:0003677
Dod05g2324 205 MobiDBLite consensus disorder prediction 54 83 - -
Dod05g2324 205 MobiDBLite consensus disorder prediction 1 32 - -
Dod05g2324 205 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2324 Dod-Chr5 49530700 49532921 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2324 72 201 Homeobox Transcription Factor Family AT4G37790 63.636 7.20e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod05g2324 Homeodomain 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2324 K09338 - gmx:100812222 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2324 05 49530700 49532921 Dod03g1487 03 19832894 19834478 PCT