Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2308 ATGACGACTCGAATAGCGCCCGGCGTGGGAGCGAACTTGCTGGGTCAGCACTCGGCGGAGAGGAATCAAGATGCTACTGCTTATGTCGGCAACCTCGATCCCCAGGCTACTGAGGACTTGCTCTGGGAGCTTTTCGTTCAGGCTGGCCCTGTCGTTAATGTCTATGTTCCAAAGGACAGAGTCACCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGCAGTGAAGAAGACGCCGACTATGCCATCAAGGTGCTTAATATGATTAAGCTTTATGGCAAACCAATTCGCGTAAACAAGGCTACTCAAGATAAGAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGAAACCTTGATCCTGATGTGGACGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGAGACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACCAAAGGGGAAAGGCACGGTACTCCAGCAGAAAGAGTTTTGGCTGCAAGCAACCCAACTGCACAGAAGAGCAGGCCTCATACTTTATTTGCCAGTGGACCTCCGACGCTTCCCAATGTTGGTCAGGCTAATGGTACCGTTGCTGCTCCAGTGCCTCCTCGCCCCTTTGCTAATGGGGTTGCTCCGGCTGCTATTCCTGCCCTCCGTCCACCACCCCCTCAAGCTGCAGCATTCCAGCCTATGCCAGTAGGTGGGCAGCCTGGTTGGCATCAGCAGCAGCCTGGTTTACCACCTGTGATGCATCAGCATCATCCTCAAGTCCAGCAGTTCAGGCCACCTCCCTCTGGTATGCCAATGCCACCACCTCCACAAGCTGTTTCGGCTCCTCCAAGACCTCTTCCACCACCAACAGTGATGGCAAGCCAACCACCTGTTTGGAGGCCGCCACCACCGCCTCCGCCTCATCAACAGGGTGGACGGCCTTTGGCATATCCTCAATCCTCAATGCCTCCACCTCCTCCCAATAACCCTATGCCACCACCTTCAAGTTGA 1131 0.5075 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQATEDLLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNVGQANGTVAAPVPPRPFANGVAPAAIPALRPPPPQAAAFQPMPVGGQPGWHQQQPGLPPVMHQHHPQVQQFRPPPSGMPMPPPPQAVSAPPRPLPPPTVMASQPPVWRPPPPPPPHQQGGRPLAYPQSSMPPPPPNNPMPPPSS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2308 376 CDD RRM2_SF3B4 111 193 IPR034159 -
Dod05g2308 376 CDD RRM1_SF3B4 28 100 IPR034158 -
Dod05g2308 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Dod05g2308 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Dod05g2308 376 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 356 - -
Dod05g2308 376 MobiDBLite consensus disorder prediction 304 376 - -
Dod05g2308 376 Gene3D - 16 111 IPR012677 -
Dod05g2308 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Dod05g2308 376 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Dod05g2308 376 PANTHER TRANSFORMER-2-RELATED 1 356 - -
Dod05g2308 376 Gene3D - 112 200 IPR012677 -
Dod05g2308 376 SMART rrm1_1 26 99 IPR000504 GO:0003723
Dod05g2308 376 SMART rrm1_1 113 187 IPR000504 GO:0003723
Dod05g2308 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Dod05g2308 376 MobiDBLite consensus disorder prediction 258 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2308 Dod-Chr5 49373157 49376581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2308 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.798 1.25e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2308 K12831 - gmx:100791039 567.77