Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2297 ATGGAGAATATTGGTGAGGAGTACAAGCATTACTGGGAGACCAACATGTTCCTCCAAAACGAAGAGCTTGACAGCTGGGCATTGGAAGAGGCGGCGTTCTCCGGGTACTACGACTCGAGCTCCCCGGATGGCGCGGCTTCATCGGCGGCGTCGAAGAACATTGTCTCGGAGAGGAATAGGAGGAAGAAGCTCAATGACAGGCTCTTTGCTCTTAGGGCTGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCTATCATCAAGGACGCAATTGATTACATCCAGCAATTGCATGAGCAAGAGAAGACAATCCAAGGGGAGATAATGGAGCTTGAATCCGGGAAGCTCAAGAATCCAAATGCAAGCAGCTATGACTTTGAGCAGGAGCAGCTGCCCGTTTTGCTAAGGTCCAAGAAGAAGAGAACAGACCAGTTGTTTGATTCTGCTGCAACTTCCAGAAGTTCTCCAATTGAAGTCATTGAGCTGAGGGTTACATACATGGGAGCGAAGACGTTTGTGGTGAGCTTGACATGCAGCAAAAGGACAGATACAATGGTGAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTGAAGATCATCACAGCCAGCATCACTTCTTTTCCAGGCACACTTTGGAAGACGGCCTACATTGAGGCAGATGAAGGAGAGAAAGATCTTTTGCAGATAAAAATAAAGGCAGCCATTGCAGCTCTTAATGATCCCCAAAGCCCAATGAGCGTCTAA 744 0.4758 MENIGEEYKHYWETNMFLQNEELDSWALEEAAFSGYYDSSSPDGAASSAASKNIVSERNRRKKLNDRLFALRAVVPNISKMDKASIIKDAIDYIQQLHEQEKTIQGEIMELESGKLKNPNASSYDFEQEQLPVLLRSKKKRTDQLFDSAATSRSSPIEVIELRVTYMGAKTFVVSLTCSKRTDTMVKLCEVFESLKLKIITASITSFPGTLWKTAYIEADEGEKDLLQIKIKAAIAALNDPQSPMSV* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2297 247 SMART finulus 54 103 IPR011598 GO:0046983
Dod05g2297 247 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 241 - -
Dod05g2297 247 Gene3D - 45 114 IPR036638 GO:0046983
Dod05g2297 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 112 IPR036638 GO:0046983
Dod05g2297 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Dod05g2297 247 PANTHER TRANSCRIPTION FACTOR BHLH35 1 241 - -
Dod05g2297 247 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2297 Dod-Chr5 49189610 49195748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2297 1 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.086 2.18e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g2297 HLH 4.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2297 - - qsu:112012381 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2297 05 49189610 49195748 Dod03g1462 03 19236971 19245704 PCT