Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2290 ATGCGGGATAGCAAGAAGTCAAATAAAAGACAGTTGCAAAAATCTAGTCATTCAAAGGCACAAACGGAGTCCAGGCTAAATTCATCCTTGAGAGTCAAAACAAGTAGCACAAAGAGCCGAGTGAAGAAACATAAGCTGAAATCAAAATCTCAATCACAAAACGATGGCACAAACATGTCAAGGAAGAGAAAAACCGACTCTTTCATCAAGGGGCCTAGCAAGGATTCTTCAAAAAAGAAATTGATTATCAGGATACGTTTAAATAAAACTGATGGAAAATCTTCGCAGAAGTTGTCCTCAAAGACGAAGACAAAGTTACAAGGTGAAAAAGTTTCTGTTAGTTCTAGAAAAAATGGGAAAGATGTTGATGGGGAAGTAAAGCCTCAAAAGAGAAAGAGAAAGACAAGGAAGAAAACGCAAAGGAATAATGTGGATCCTGATGATGCTTCTCGCCTCAAGAGGAGAACAAGGTACCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGCCGAAGGTTGGAAGGGCCAGAGTCGAGAAAAGATTAGGCCCGAAAAGGAGCTACAAAGAGCACAAAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCTATTCACCAGTTGGATTCTCTTAGTTCGTTGAGTAGCATTGAAGATTCTGCCATTGCTCCAGATGGATCTAATTACCCTGAACATATGTACTGTCAAAAGTGCAAGTTGCATGACGACATTCCAGATAATGACATTATACACTGTGATGGTACATGCAATCGTGCTTTTCACCAAAAATGTCTTGATCCTCCCTTAGACATTGAAAATATTCCTCCTGGAGAACATGGCTGGCTCTGTAAGTTTTGCGAGTGTAAGATGGATATACTAGAGGTGATGAATGCCCACCTTGGAACTCGCTTCTCCTTACACAGTACTTGGCAGGATGTATTTAAGGAAGAGGCTGCTAAACCTGATGGTGATACTGCGTTTCTGAATCCTGAAGAAGAATGGCCATCGGATGATTCTGAAGATGATGATTATAATCCAGAGAGGAGAGAAGACTGCAGTAACATCAACACAGAAGGAAGCGGGGACAATGCATCTGATGATTTAAGCAGTTCTACCAGTTTATGTTCTTCCGATGGTGAATGTTCTCTAATAGATGAAGGTGTCAACCATGAATATTCATCTGTTAATGGATGCATAGATTCTGATGAATCAAGGGAAAAAGTCTGTGGCCCTAGGCAGCGGAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTGCTACATGTGAACAAGTGAGTGATGATGAAGACTGGGGTCCTGGCAAAAGAAAGACAAGAGAAAAGGAGTCTGATGCTGTCAATACTCTTATGAATTTACATAAAAGCCAGGACAATGAGCACAAAAACTTGAAAAGAGAGGATTCTTCAGGCATACAAATCAAGAGGCCTTGTTTTCGGATGCCCCATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAACTTCCTTCAAGACCTATGAAGGAGGCTCTTTCAAAAGAGCTGGGACTTGATGCTGTGAAGGTTAGCAAATGGTTCAAAAATGCTCGTTACTCAGCACTTAAATCCAGAAAGCAACAGGCAGAAGGAGCAGATCAAGTTCAGAATCTTACTTCAAAGAAGCGCCCTGGATTACAAAATCCAGATAAAGCTGAGCTTTCGAAATCGAAGGCCTCGAAATGTACTATGAGCCATCCTCAGCACAGTGTTAAAATCACTGCCGGTAGAAAGAAAAGACAACAAAAAATGTGTCCACCTCAGCCAAGAGAAAATGGCATGAAGGACTTGGAGGAGCTCAGTGATGATGTGTGCTTGAAGAACCTCTTGAAACATAGAAAGAAAAGGGTGAAGTCTGCATTTAAAGTAGACTCTCATGCAGCAGCAGAGTTGGAATTTGAAAGACTAAGCAAAGTGAAGGCTAAACTAGATAACATGAGGCAAAAGTTAACTGCAATTCTTAATCAGAGAGTTAATGGTTCAGATGAATCCCAGTGGAATGGACCATCAATTATATATGTACCCACTGCTGTGCTAAGGGAAAAGGTTGACTAA 2127 0.4062 MRDSKKSNKRQLQKSSHSKAQTESRLNSSLRVKTSSTKSRVKKHKLKSKSQSQNDGTNMSRKRKTDSFIKGPSKDSSKKKLIIRIRLNKTDGKSSQKLSSKTKTKLQGEKVSVSSRKNGKDVDGEVKPQKRKRKTRKKTQRNNVDPDDASRLKRRTRYLLIKMKLEQNLIDAYSAEGWKGQSREKIRPEKELQRAQKQILKCKLGIRDAIHQLDSLSSLSSIEDSAIAPDGSNYPEHMYCQKCKLHDDIPDNDIIHCDGTCNRAFHQKCLDPPLDIENIPPGEHGWLCKFCECKMDILEVMNAHLGTRFSLHSTWQDVFKEEAAKPDGDTAFLNPEEEWPSDDSEDDDYNPERREDCSNINTEGSGDNASDDLSSSTSLCSSDGECSLIDEGVNHEYSSVNGCIDSDESREKVCGPRQRKAVDYKKLYDEMFGKDAATCEQVSDDEDWGPGKRKTREKESDAVNTLMNLHKSQDNEHKNLKREDSSGIQIKRPCFRMPHDAVEKLRQVFAENELPSRPMKEALSKELGLDAVKVSKWFKNARYSALKSRKQQAEGADQVQNLTSKKRPGLQNPDKAELSKSKASKCTMSHPQHSVKITAGRKKRQQKMCPPQPRENGMKDLEELSDDVCLKNLLKHRKKRVKSAFKVDSHAAAELEFERLSKVKAKLDNMRQKLTAILNQRVNGSDESQWNGPSIIYVPTAVLREKVD* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2290 708 SUPERFAMILY Homeodomain-like 491 553 IPR009057 -
Dod05g2290 708 Coils Coil 463 483 - -
Dod05g2290 708 SMART HOX_1 490 552 IPR001356 GO:0003677
Dod05g2290 708 PANTHER POLYCOMB PROTEIN PCL 4 676 - -
Dod05g2290 708 MobiDBLite consensus disorder prediction 114 129 - -
Dod05g2290 708 MobiDBLite consensus disorder prediction 92 113 - -
Dod05g2290 708 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Dod05g2290 708 MobiDBLite consensus disorder prediction 1 151 - -
Dod05g2290 708 Gene3D - 490 557 - -
Dod05g2290 708 Coils Coil 660 680 - -
Dod05g2290 708 Pfam PHD-finger 239 294 IPR019787 -
Dod05g2290 708 MobiDBLite consensus disorder prediction 14 35 - -
Dod05g2290 708 MobiDBLite consensus disorder prediction 336 350 - -
Dod05g2290 708 MobiDBLite consensus disorder prediction 59 91 - -
Dod05g2290 708 SUPERFAMILY FYVE/PHD zinc finger 231 296 IPR011011 -
Dod05g2290 708 MobiDBLite consensus disorder prediction 547 620 - -
Dod05g2290 708 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 4 676 - -
Dod05g2290 708 MobiDBLite consensus disorder prediction 324 376 - -
Dod05g2290 708 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Dod05g2290 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 302 IPR013083 -
Dod05g2290 708 SMART PHD_3 239 292 IPR001965 -
Dod05g2290 708 Pfam Homeodomain 499 543 IPR001356 GO:0003677
Dod05g2290 708 CDD PHD_PRHA_like 239 291 IPR045876 -
Dod05g2290 708 MobiDBLite consensus disorder prediction 361 376 - -
Dod05g2290 708 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Dod05g2290 708 CDD homeodomain 491 552 IPR001356 GO:0003677
Dod05g2290 708 MobiDBLite consensus disorder prediction 547 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2290 Dod-Chr5 49142931 49148887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2290 142 553 Homeobox Transcription Factor Family AT4G29940 55.059 5.89e-147 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Dod05g2290 Homeodomain 7.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2290 - - gmx:100817639 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2290 05 49142931 49148887 Dod03g1457 03 19172311 19179781 PCT