LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g2284	ATGAGGTTGTTGGCGTTTGGGTGTGTTTTTGTTGTTCTATGTGCTCTTATGGTGTCTGGGAAGGGTGATATTTACATTGTGACTGTTGAAGGTGAGCCTATCATCAGTTATGCTGGGGGTATTGATGGGTTTGAAGCCACTGCTGTGGAGTCTGATGAGAAGATTGATACCACCAGTGAATTGGTTACCTCATATGCTCACCATCTTGAAAAGAAACATGATACACTTCTTGGGATGCTGTTTGAGCCTGGGACGTACGAGAAACTCTATAGCTATCGTCATCTTATAAATGGGTTTGCTGTTCATATTTCCCCAGAACAGGCAGAAACACTACGACATGCTCCTGGAGTGAAATCTGTTGAGAGGGACTGGAAAGTTAGGAGACTTACAACACATACCCCACAATTTTTGGGACTTCCAACTGGGGTATGGCCGACAGGAGGTGGCTTTGACCGCGCTGGAGAAAACATTGTAATTGGATTCGTGGATTCAGGGATCTATCCTCACCACCCAAGCTTTGCAACTCATAATACTGAACCATATGGGCCAGTTCCAAAGTATAGAGGAAAATGTGAAGCTGATCCTGATACTAAAAGAAGTTACTGTAATGGGAAGATTATTGGAGCACAACACTTTGCCCAAGCTGCAATAGCTGCTGGGGCATTTAACCCTTCAATTGATTTTGCATCTCCTCTAGATGGGGATGGACATGGAAGTCATACAGCCTCGATAGCTGCTGGCAATAATGGAATTCCAGTGAGGATGCATGGCCATGAATTTGGTAGAGCAAGTGGAATGGCTCCTCGTGCCAGAATTGCTGTGTACAAGGCACTCTATAGACTCTTTGGAGGGTTTGTTGCAGATGTAGTTGCTGCAATTGATCAGGCTGTATTCGATGGAATTGATATACTCAGCCTTTCAGTTGGACCCAACAGTCCTCCAGCAGCCACCAGGACCACGTTTTTGAACCCTTTTGATGCTACACTTCTTGGAGCTGTGAAAGCTGGTGTATTTGTTGCACAGGCTGCTGGAAATGGTGGTCCTTTTCCTAAGACATTGGTTTCATATAGTCCATGGATAGTATCTGTTGCAGCAGCAATTGATGATCGTAGATACAAAAACCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCACCTGCTACTCATTTGAATGAAACATACACATTGGTTGCTGCAAATGATGCACTACTAGATTCCTCAGTTATGAAGTACAGCCCCACGGATTGCCAGAGACCAGAACTTCTAAACAAGAAATTGATAGAGGGCAATATTCTTCTCTGTGGATATTCTTTCAACTTTGTTTCTGGTACAGCATCAATAAAGAAAGTCTCAGAAACAGCGAAGGCCCTTGGTGCGGCTGGATTTGTTGTTTGTGTTGAAAACGTTTCACCTGAAACAAAATTTGATCCAGTCCCTGTTGGCCTTCCTGGGATTCTTATCACAGATGCCAGCAATTCAAAGGAACTTGTAGATTATTATAATATCTCTACACCAAGGGACTGGACTGGACGGGTGAAGAGTTTCAAAGGTACAGGTAAAATTGGTGATGGTTTGATGCCTATTCTCCATAAATCTGCACCACAGGTAGCTTTATATTCTGCTCGAGGGCCAAATATAAAGGACTTCAGCTTCCAAGAGGCAGATCTCCTCAAACCAGACATATTAGCTCCCGGTTCATTGATTTGGGCTGCTTGGAGTCCAAATGGAACAGATGAGCCAAATTATGTTGGTGAGGGGTTTGCCATGATATCTGGAACTAGCATGGCTGCACCACATATAGCTGGCATTGCTACTCTTATAAAGCAGAAGCATCCACATTGGAGCCCTGCTGCCATTAAATCAGCCTTGATGACAACAACATCAACTCTAGACAGAGCAGGGAATCCCCTTCTAGGCCAACAAATTTCTGAAACAGAAACTATGAAGCTGGTCAAAGCTACACCTTTTGATTATGGAAGTGGACATGTTAATCCAACAGCTGCATTGGACCCTGGGCTCATCTTTGATGCAGGTTTGATTCCCTCTTCCCTATTGTAA	2073	0.4375	MRLLAFGCVFVVLCALMVSGKGDIYIVTVEGEPIISYAGGIDGFEATAVESDEKIDTTSELVTSYAHHLEKKHDTLLGMLFEPGTYEKLYSYRHLINGFAVHISPEQAETLRHAPGVKSVERDWKVRRLTTHTPQFLGLPTGVWPTGGGFDRAGENIVIGFVDSGIYPHHPSFATHNTEPYGPVPKYRGKCEADPDTKRSYCNGKIIGAQHFAQAAIAAGAFNPSIDFASPLDGDGHGSHTASIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVFDGIDILSLSVGPNSPPAATRTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWIVSVAAAIDDRRYKNHLILGNGKTLAGIGLSPATHLNETYTLVAANDALLDSSVMKYSPTDCQRPELLNKKLIEGNILLCGYSFNFVSGTASIKKVSETAKALGAAGFVVCVENVSPETKFDPVPVGLPGILITDASNSKELVDYYNISTPRDWTGRVKSFKGTGKIGDGLMPILHKSAPQVALYSARGPNIKDFSFQEADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEGFAMISGTSMAAPHIAGIATLIKQKHPHWSPAAIKSALMTTTSTLDRAGNPLLGQQISETETMKLVKATPFDYGSGHVNPTAALDPGLIFDAGLIPSSLL*	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g2284	690	Gene3D	Peptidase S8/S53 domain	156	683	IPR036852	GO:0004252\|GO:0006508
	Dod05g2284	690	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	19	128	IPR037045	-
	Dod05g2284	690	PRINTS	Subtilisin serine protease family (S8) signature	596	612	IPR015500	-
	Dod05g2284	690	PRINTS	Subtilisin serine protease family (S8) signature	233	246	IPR015500	-
	Dod05g2284	690	PRINTS	Subtilisin serine protease family (S8) signature	154	173	IPR015500	-
	Dod05g2284	690	Gene3D	-	369	534	-	-
	Dod05g2284	690	CDD	PA_subtilisin_like	376	514	-	-
	Dod05g2284	690	SUPERFAMILY	Protease propeptides/inhibitors	86	127	-	-
	Dod05g2284	690	Pfam	Subtilase family	154	636	IPR000209	GO:0006508\|GO:0008236
	Dod05g2284	690	ProSiteProfiles	Serine proteases, subtilase domain profile.	123	674	-	-
	Dod05g2284	690	CDD	Peptidases_S8_3	130	631	IPR034197	-
	Dod05g2284	690	ProSitePatterns	Serine proteases, subtilase family, aspartic acid active site.	159	170	IPR023827	-
	Dod05g2284	690	SUPERFAMILY	Subtilisin-like	129	678	IPR036852	GO:0004252\|GO:0006508
	Dod05g2284	690	PANTHER	CUCUMISIN-RELATED	15	682	-	-
	Dod05g2284	690	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	15	682	IPR045051	-
	Dod05g2284	690	Pfam	Peptidase inhibitor I9	25	127	IPR010259	-
	Dod05g2284	690	ProSitePatterns	Serine proteases, subtilase family, serine active site.	597	607	IPR023828	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g2284	Dod-Chr5	49031864	49039017	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g2284	4	683	Subtilisin-like Serine Gene Family	AT4G30020	80.764	0.0	1140

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod05g2284	05	49031864	49039017	Dod03g1450	03	19073596	19081627	PCT