Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2256 ATGAGGTCTATTAGGACCAACAGCTTGAAGAGGCTCTTCTCGTTGAGAAGGCGCGGTTCTGGGGAACATGTTCTGAGCCGGAGCGGTTCTACTGTTGGAGAAAACGATGAGGGCTTGGAGATACTTCCAACTCCAAATGAAGAATGTTCTCAAAGACCCTCTTGGAAATGCTTCTCCTATGAAGAACTTTTTGATGCCACCAACGGTTTCAGCTCAGAAAATCTGGTTGGAAAGGGTGGCTATGCAGAGGTATACAGGGGAACACTGAAAGATGGAGAGGAAATTGCTGTGAAGAGGCTTACAAGAACTTGCAGGGATGAGAGAAAGGAGAAAGAATTCTTAACAGAGATCGGTACAATTGGTCATGTAAACCATTCCAATGTTTTGCCTCTCCTGGGGTGTTGTATTGATAACGGGCTTTACCTTGTTTTTGAGCTTTCCACTAGAGGCTCTGTTGCATCCCTTCTTCATGATGAAAAATTGCCTCCTGTGGATTGGAAAACAAGGCATAAGATAGCTCTTGGGACTGCACATGGCCTCCATTACTTGCACAAAGGATGCAAGAGAAGGATAATCCACCGGGACATCAAGGCATCAAATATTCTATTGACAGAAGATTTTGAACCACAGATATCTGATTTTGGACTAGCGAAATGGCTTCCATCCCAATGGACTCATCATTCCATTGCCCCAATAGAAGGGACATTTGGGCATTTGGCCCCTGAGTACTATCTGCATGGGGTTGTGGATGAGAAGACAGATGTGTTTGCCTTTGGTGTTTTCTTGCTTGAAGTCATCTCTGGGAGGAAACCGGTGGATGGGTCTCACCAAAGCTTACATACCTGGGCTAAACCAATATTGAAGAAAGGGGAGATAGAGAAGCTTGTGGATCCAAGGCTTGAAGGGGCATATGATACAACACAGTTAAAACGACTTGCCTTTGCAGCATACTTGTGCATCCGGGCATCTTCAATTTGGCGACCTACCATGAGCGAGGTATTAGAGGTAATGGAGGAGGGAGAGATTGAGAAAGAGAAGTGGAAAATGCCAGAGGATGAAGAAGAACAAGAGGAGGAGTTCTGGGGTTTCGATGATCTGGAATATGAATATGACAGTTCCTTATCAATGTCTCTACCTGAATCCACTGGAAGTACTTAG 1158 0.4491 MRSIRTNSLKRLFSLRRRGSGEHVLSRSGSTVGENDEGLEILPTPNEECSQRPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYRGTLKDGEEIAVKRLTRTCRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSTRGSVASLLHDEKLPPVDWKTRHKIALGTAHGLHYLHKGCKRRIIHRDIKASNILLTEDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHTWAKPILKKGEIEKLVDPRLEGAYDTTQLKRLAFAAYLCIRASSIWRPTMSEVLEVMEEGEIEKEKWKMPEDEEEQEEEFWGFDDLEYEYDSSLSMSLPESTGST* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2256 385 SMART serkin_6 70 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2256 385 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Dod05g2256 385 Gene3D Transferase(Phosphotransferase) domain 1 148 363 - -
Dod05g2256 385 PANTHER OS04G0654600 PROTEIN 44 367 - -
Dod05g2256 385 Gene3D Phosphorylase Kinase; domain 1 42 146 - -
Dod05g2256 385 SUPERFAMILY Protein kinase-like (PK-like) 48 337 IPR011009 -
Dod05g2256 385 PANTHER OS08G0249100 PROTEIN 44 367 - -
Dod05g2256 385 Coils Coil 97 117 - -
Dod05g2256 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Dod05g2256 385 Pfam Protein tyrosine and serine/threonine kinase 73 278 IPR001245 GO:0004672|GO:0006468
Dod05g2256 385 ProSiteProfiles Protein kinase domain profile. 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2256 Dod-Chr5 48668799 48673363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2256 56 352 Receptor kinase-like Gene Family AT1G60800 43.934 8.81e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dod05g2256 PK_Tyr_Ser-Thr 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2256 - - ahf:112697971 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2256 05 48668799 48673363 Dod05g2256 05 48668799 48673363 ECH
Dod05g2256 05 48668799 48673363 Dod03g1416 03 18365526 18369543 PCT