Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2253 ATGGATTCGCTCTCTGTTCCACAATTCAGAGCATCTTCTTCTATTGGTGTTGCACTTGATCCTTCTAAATGCAGTAAGTTGAGTATGGAGGAAAAAAGAGAACTTGTGTATGAGATATCCAAATGGTCTCATGGTGCATCCGAGCTGCTACAGTCATGGAGTCGTCAAGAGATTTTACAAATATTGTGTGCAGAGATGGGGAAAGAAAGGAAGTATACTGGGCTGACAAAGTTGAAAATCATAGAAAACCTTCTAAAAATTGTTGCTGAAAAGAAGTCAGGGGGGCATGAAACTGCAACAGAATCTGAACCACATTCTTCTCCTGCACATGGTCAGAAACCTGCTAAAAGGCAGAGAAAAACTGAGAATCCATCTCGATTACCTGTGCCTGCAAACAATGTTTCAGTCAATAGTGCTGGCGATGTGGGTAGTACCACATACTGCAAAAATTCAGCTTGCAAAGCTACCCTGAATCAAGGAGATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGCTCTGAGTCTCCGTTTCCTGGTGATTCTTGTGGCTTGTCATGCCACCTTGCGTGTGCTTTAAAACATGATGGGTCTGGCATTGGCAAAGCAAGTGAACGTCCCAAGCTTGATGGAGGCTTCTACTGTGTCTCTTGTGGGAAAGTAAATGATTTGCTCGGGTGCTTGAGAAAACAACTGATGGTAGCAAAGGATACCAGACGTGTGGACATACTCTGTTACCGTGTCTCCTTAAGCCAAAGACTTCTGCAAGGGACTGAAACCTATCGAAAACTGTATGAACTTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCATTGACTGGCTCACCAGTGAAGATTGGTAGGGGGATTGTGAATAGGCTTTCATCAGGACCAGAGGTTCAGAAACTTTGTGGTTCTGCTCTGGAATCTCTCGACTCACTGCTTTCTAAAAGGGTGTTGCCTTTGCCACCGAATCCAACAGTTCAAGATGCAAATTTGCTTGCTCCAAATATGGTGAGGTTTGAAGACGTCTCTGCAACATCCCTTACTGTTATTTTGGGATCTGAAAATCCTTCTGGAGAAAATACCACTGGTTACACCTTGTGGCATCGCAAAGCTGATGATGAGGACTATCCGGTGGACCCAACTTGCACTTTGCTTCTACCAAATAGAAGGCTCTGTATCAGGGATCTTACTCCGGCTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTCAAGGGAGCCGGGTACGTGTGAAGTTCATATCTCAACAGAGCATAGTGAGGATGAAGCCCCTAATTGCTCAGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCATCGTCAGTGGAAGATGAGACGAATAACAGTAACCCATACAGTGACCAGACTGATAATCGCTCAGACAATTATCGTGCTTATCACAAGGATTCTGAGCAGCTTGCTTCTGGAAATGTGTCTAACGATGCTATTAACTGTTCCAATATAGGTGTAGTTGGACTTCCCACTGATTCAGATTCTTTGTCAGACAAGCAGCATGCTGCTGGAATGGCTGTCTCCCTTCCTGGTTCTGATGTCCTGAAGCTTGAAAACAAGCATTCGCCAGAGGAACAAGTCACCGAGGACATGAGCATTGATGACGCGTTGAATTCCCCAGTGCTAACCGGCAGAGAATGCATACCGTTAGCAGCTAGCTCAGAAGGAGGCTTGCCTAATACTCCCTGCAAGATGGAGATGCTCAAGGATGGGCCTGGAAGAAATGGGAGATCTAAATCCACTGGCAAAGATCAAGAAAATGGACCCGTGAAAAGGGATGGGCCACAAGATGGAAGCACATCCAAGAAGCGAAGCGGCGAAAGGCAAGACGAGGGCTGCACGGCCATTGGGTTTTCTGACCGGGATTTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGGCACATAGAAAAGAACTTCAGGCAGAAGTTTCTGACTTGGTTCAGCTTGAGAGCATCCCCCCAAGAAGTGAGGATTGTGAAGATATACGTAGACACATTCCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTGGACACTTTCACAGAATGTATATCAAGCAAGAGAACATCAGTGGTGCCAGCAGGGTTCTGCATGAAGCTTTGGCATTGA 2235 0.4497 MDSLSVPQFRASSSIGVALDPSKCSKLSMEEKRELVYEISKWSHGASELLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVAEKKSGGHETATESEPHSSPAHGQKPAKRQRKTENPSRLPVPANNVSVNSAGDVGSTTYCKNSACKATLNQGDAFCKRCSCCICHQYDDNKDPSLWLICSSESPFPGDSCGLSCHLACALKHDGSGIGKASERPKLDGGFYCVSCGKVNDLLGCLRKQLMVAKDTRRVDILCYRVSLSQRLLQGTETYRKLYELVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKLCGSALESLDSLLSKRVLPLPPNPTVQDANLLAPNMVRFEDVSATSLTVILGSENPSGENTTGYTLWHRKADDEDYPVDPTCTLLLPNRRLCIRDLTPATEYSFKVVSNDSREPGTCEVHISTEHSEDEAPNCSATERSQSPVTNCSSLSNPSSVEDETNNSNPYSDQTDNRSDNYRAYHKDSEQLASGNVSNDAINCSNIGVVGLPTDSDSLSDKQHAAGMAVSLPGSDVLKLENKHSPEEQVTEDMSIDDALNSPVLTGRECIPLAASSEGGLPNTPCKMEMLKDGPGRNGRSKSTGKDQENGPVKRDGPQDGSTSKKRSGERQDEGCTAIGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWFSLRASPQEVRIVKIYVDTFLEDPASLAEQLVDTFTECISSKRTSVVPAGFCMKLWH* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2253 744 CDD PHD_VIN3_plant 168 233 - -
Dod05g2253 744 MobiDBLite consensus disorder prediction 442 495 - -
Dod05g2253 744 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 744 IPR044514 GO:0010048|GO:0040029
Dod05g2253 744 SUPERFAMILY Fibronectin type III 353 431 IPR036116 GO:0005515
Dod05g2253 744 CDD FN3 353 435 IPR003961 GO:0005515
Dod05g2253 744 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 744 - -
Dod05g2253 744 MobiDBLite consensus disorder prediction 453 492 - -
Dod05g2253 744 Gene3D Immunoglobulins 352 466 IPR013783 -
Dod05g2253 744 MobiDBLite consensus disorder prediction 590 648 - -
Dod05g2253 744 MobiDBLite consensus disorder prediction 93 136 - -
Dod05g2253 744 ProSiteProfiles Fibronectin type-III domain profile. 353 446 IPR003961 GO:0005515
Dod05g2253 744 Pfam PHD - plant homeodomain finger protein 148 267 IPR032881 -
Dod05g2253 744 MobiDBLite consensus disorder prediction 607 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2253 Dod-Chr5 48645340 48651041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2253 12 493 PHD Gene Family AT4G30200 54.511 2.58e-167 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2253 - - gmx:100794721 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2253 05 48645340 48651041 Dod05g2253 05 48645340 48651041 ECH