Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2252 ATGGACTCTTCCTCTTCTTCACCGCGCACAAACAACGCCAACTCCCTTGCTTTCTCTCTTTCCAGCCACTTCCCCAACTCTTCACACTCTTCCTCCTCTCACCTCTCCCTTTTCCACTCCTTCAACTATCCCACCCCCACCCCTTCTCTCACCCTCACACGAGGTAGCAACACCTTGGAGGCATCGCCGGAGGCAGCCGACTGCACCGTCGGTGGAGTGACCAACCTCTCTATATTCACCGGCGGACCGAAGTTCGAGGACTTCCTTGGCGGCTCCGCCGCCGCAACAGCCACCGCATGTGCACCACAACAACCAGCACCAGCACCACCGCCACAGCTTCCCCTCTTCTCCACCGACCACAACAACGACATATACGACTCGGAGCTGAAGTCAACCATCGCCGCCTGCTTCCCGCGCGGCTTCGGCGCCGAAGCAAACGCCGAGCCGCTGAAGCCCTCTACGAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACACGACATAGATGGACTGGGAGATATGAAGCTCATCTATGGGATAATAGCTGCAGAAGGGAAGGACAAAGCAGAAAAGGAAGACAAGTTTATTTGGGTGGCTACGATAAGGAAGATAAGGCAGCCAGAGCTTATGATCTCGCAGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTGGAGGAAATGAAGAACATGACTAGGCAAGAGTTTGTCGCTTCTCTAAGAAGGAAGAGCAGTGGTTTCTCTAGGGGTGCCTCTATATACAGAGGAGTGACTAGGCACCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTTTACCTTGGCACTTTCAGCACCCAAGAAGAAGCTGCGGAAGCCTATGACATTGCAGCTATCAAATTCAGAGGACTGAACGCAGTCACAAACTTTGACATGAGTCGCTACGACGTGAAGAGCATCGCAAACAGCACCCTTCCCATTGGTGGATTGTCATGCAAGAACAAAAACTCCACAGATTCTCTATCTGATCCCAAAAGCCTCGAGGCGAGCCGTTCCGACGAACGAGATCCATCTTCAGCCAATTCATCCGTGACCTTTGCAGCAGCATCTCAGCAACCATCAAGCTCAACTCTGAGCTTCGCCATTCCCATCAAGCAAGACCCTTCAGATTACTGGTCCATCTTAGGGTACCCTAACCCTCCACTCGAAAGCGCTGTCAAGAACACTACTAGTGTCACTGCACCCGCAATCTCCTTTCCACCTTCAGACAGCAATGGCACTTCCTTGCAGAGCTCAACTTCCACCACACCCTTCTACATGGACTTCTCTGCTGCACCCTCAAATACTAACAGTGATAACAATGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTCCACCATCAACAACAACATCAACAACAACAAAGTGGTGGAAGCAGCGTTTCCTCATCGAGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGTAACAGCAGTTATGAGAGCTCTACCGGTTATGGAAACTGGATTGGGCCAACACTGCACACATTCCAATCCCATGCAAAACCCAGTCTCTTTCAAACGCCAATATTTGGCATGGAATGA 1659 0.5166 MDSSSSSPRTNNANSLAFSLSSHFPNSSHSSSSHLSLFHSFNYPTPTPSLTLTRGSNTLEASPEAADCTVGGVTNLSIFTGGPKFEDFLGGSAAATATACAPQQPAPAPPPQLPLFSTDHNNDIYDSELKSTIAACFPRGFGAEANAEPLKPSTKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSCKNKNSTDSLSDPKSLEASRSDERDPSSANSSVTFAAASQQPSSSTLSFAIPIKQDPSDYWSILGYPNPPLESAVKNTTSVTAPAISFPPSDSNGTSLQSSTSTTPFYMDFSAAPSNTNSDNNAAFFSGGGIFVHHQQQHQQQQSGGSSVSSSSSIPFATPIFSLNSNSSYESSTGYGNWIGPTLHTFQSHAKPSLFQTPIFGME* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2252 552 ProSiteProfiles AP2/ERF domain profile. 269 327 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 SUPERFAMILY DNA-binding domain 166 235 IPR016177 GO:0003677
Dod05g2252 552 CDD AP2 268 329 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 ProSiteProfiles AP2/ERF domain profile. 167 233 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 SUPERFAMILY DNA-binding domain 268 329 IPR016177 GO:0003677
Dod05g2252 552 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 PRINTS Ethylene responsive element binding protein signature 309 329 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 MobiDBLite consensus disorder prediction 348 384 - -
Dod05g2252 552 Pfam AP2 domain 167 225 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 Pfam AP2 domain 269 319 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 SMART rav1_2 167 239 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 SMART rav1_2 269 333 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 151 500 - -
Dod05g2252 552 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 151 500 - -
Dod05g2252 552 CDD AP2 166 235 IPR001471 GO:0003700|GO:0006355
Dod05g2252 552 Gene3D AP2/ERF domain 269 329 IPR036955 GO:0003700|GO:0006355
Dod05g2252 552 Gene3D AP2/ERF domain 167 235 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2252 Dod-Chr5 48605486 48609536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2252 123 419 AP2-EREBP Transcription Factor Family AT5G57390 70.662 1.69e-144 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod05g2252 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2252 K09285 - gmx:100797828 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2252 05 48605486 48609536 Dod05g2252 05 48605486 48609536 ECH