Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2251 ATGTATGCGAGCCAGTTCGACGGCAACGCAGCCTTCTCCGGCGGCGGATTCATGCCCTCTCAGGCTACTCAGGCCCCTGACTCTTCCTTCGCTCCCTCCAAGAATCGCGATGCTCAGTCGTTGCTTCCTCTAACAGTCAAGCAGATAAACGATGCGTATCAGTCTAGTGATGATAAAACCAATTTGATTGTCGATGGTGTCGACGTTAACAACGTTACTCTTGTAGGAAGGGTATGCAACAAAGCTGGGAGGGTCACTGATGTTACTTTTGTACTTGATGATGGTACTGGAAGGATTGAGTGTAATAAATGGCTTCAGGAAGCTGTGGATACAAATGAAGCGGAGGGTATCTTGGATGGAATGTATGTGCGTCTTCATGGACATTTGAAAGGCTTTCAGGGTAAAAGAACTTTAAATGTTTTCTCTTTTAGGCCTGTGACTGACTTCAATGAGATTGCCAGCCATTTCATCGATTGTATATATGTCCATCTCTATAATTCCAAACTAAGGCTTCAGGCTGGTGTCCCCAATCAGCATGCTACCAATGCCACACAAATTACTCCAACCAAAGGGTACCAAGCTGTCCCACCAAATCAATTCTCTGGTCAGCAGAACAACGGTCAGAAGAGTGTTGAAGATATGCTCTTAGACGTTTTACATCTTCCTGCAAACAGGGCAAGGGATGAGGGAGTCCCTCGTGAACTTATTGCACAGCAACTTGGAATCCCTATGGATAAGCTGATGATGGCAATTAAAAATCTAATTGAGGAAGGTGCCATTTATGAAGCTATAGGTGATCACTATAAGTCAATCATCAATGGTTGA 825 0.4448 MYASQFDGNAAFSGGGFMPSQATQAPDSSFAPSKNRDAQSLLPLTVKQINDAYQSSDDKTNLIVDGVDVNNVTLVGRVCNKAGRVTDVTFVLDDGTGRIECNKWLQEAVDTNEAEGILDGMYVRLHGHLKGFQGKRTLNVFSFRPVTDFNEIASHFIDCIYVHLYNSKLRLQAGVPNQHATNATQITPTKGYQAVPPNQFSGQQNNGQKSVEDMLLDVLHLPANRARDEGVPRELIAQQLGIPMDKLMMAIKNLIEEGAIYEAIGDHYKSIING* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2251 274 CDD RPA2_DBD_D 71 164 - -
Dod05g2251 274 Gene3D - 203 272 IPR036388 -
Dod05g2251 274 Pfam Replication protein A C terminal 163 266 IPR014892 -
Dod05g2251 274 SUPERFAMILY Nucleic acid-binding proteins 41 167 IPR012340 -
Dod05g2251 274 PANTHER REPLICATION PROTEIN A-RELATED 5 274 IPR040260 -
Dod05g2251 274 Gene3D - 33 168 IPR012340 -
Dod05g2251 274 SUPERFAMILY "Winged helix" DNA-binding domain 207 270 IPR036390 -
Dod05g2251 274 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A-LIKE 5 274 - -
Dod05g2251 274 PIRSF RPA32 1 272 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod05g2251 274 Pfam OB-fold nucleic acid binding domain 72 143 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2251 Dod-Chr5 48586652 48590690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2251 3 271 Core DNA Replication Machinery Family AT2G24490 46.715 7.87e-83 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2251 K10739 - gmx:100782819 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2251 05 48586652 48590690 Dod05g2251 05 48586652 48590690 ECH