Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2246 ATGATGAACAGTTTTGACCCCCAAAGGCAAGACTCCTTGAAAAGGAGATGGCAAGATAGGAGACAGATCATTATGGGTGGACCTTCAAATCCTTCATCTTTGGCTTTCTATGGTAATACTAATAACGACAACTCAAGCAGCACCAATAATATGGGCAAGTATAGCAACAGTGGCATCAAATTCCAAGGCTTCCCTGTGCTCGAGGATGATGATCTTGTGTCCACAGTAGTCCCTGCAGTGACAGTGGTGCTTGAAGGCCGTTCGATTTGCCAACGCATCAGCCTCTATAACCATGGCAGCTACCAAAGCCTAGCCAAGGCACTGAGGCAGATGTTTGTGGAGGGTACTAGTGATGCTCAAGAGAGTGATCATGATCTTGATCTCTCCAACGCCATTCCTGGTCACCTTATTGCTTATGAAGACATGGAGAATGATCTTCTTCTTGTTGGTGACCTTAGTTGGAAGGATTTTGTACGGGTGGCGAAGAGAATTCGGATACTTCCAGCCAAGGGGAACTCAAGCAAAGTTACAAGAGGGGAATGA 543 0.4604 MMNSFDPQRQDSLKRRWQDRRQIIMGGPSNPSSLAFYGNTNNDNSSSTNNMGKYSNSGIKFQGFPVLEDDDLVSTVVPAVTVVLEGRSICQRISLYNHGSYQSLAKALRQMFVEGTSDAQESDHDLDLSNAIPGHLIAYEDMENDLLLVGDLSWKDFVRVAKRIRILPAKGNSSKVTRGE* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2246 180 Pfam AUX/IAA family 74 167 IPR033389 -
Dod05g2246 180 ProSiteProfiles PB1 domain profile. 77 171 IPR000270 GO:0005515
Dod05g2246 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA33 2 176 - -
Dod05g2246 180 Gene3D - 74 178 - -
Dod05g2246 180 MobiDBLite consensus disorder prediction 25 51 - -
Dod05g2246 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 176 IPR003311 GO:0005634|GO:0006355
Dod05g2246 180 MobiDBLite consensus disorder prediction 23 51 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2246 81 167 B3 DNA Binding Superfamily AT5G20730 35.955 2.38e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Dod05g2246 AUX_IAA 4e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2246 - - tcc:18589307 211.075