Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2229 ATGAATCTCCATCCCAACACTTCTTTTCACCTAAGCCAACCTGACGAGAATCCACTCAACCTTGATCTTCTCCTTGAGCCATCTTCTTCTGCTTCATCTTCACCTGTTAGCTCCATGGAGCCTCGGATATTCTCATGCAACTACTGCCAGAGAAAGTTCTACAGCTCGCAGGCCTTGGGGGGCCATCAAAATGCTCACAAGCTTGAAAGGACACTGGCAAAGAAGAGCAGGGGGCTGAGCTCAGCCATGCAAGGTGGTGGTGGTTATGGAGTGCCAGAGCAGCCATTAAGCTTCGGTACTGCTTCTTCTTCGCACCATCTTGGTCGTGATCTTGGGGTCCTTGATAACCAAGGACAAGGTGGAGGAAGAAGAGACTTTGGCTATGGTTCCAAACAAGGGGTTCCTTCTTGGTCCCGTGTTGGTTATGCTTCTGAAAATGTTCAGGAGGATATTAGCCAACTTGACTTGTCCTTAAGGCTTTGA 483 0.4886 MNLHPNTSFHLSQPDENPLNLDLLLEPSSSASSSPVSSMEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRGLSSAMQGGGGYGVPEQPLSFGTASSSHHLGRDLGVLDNQGQGGGRRDFGYGSKQGVPSWSRVGYASENVQEDISQLDLSLRL* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2229 160 MobiDBLite consensus disorder prediction 79 129 - -
Dod05g2229 160 Gene3D Classic Zinc Finger 28 85 - -
Dod05g2229 160 PANTHER ZINC FINGER PROTEIN JAGGED 17 160 IPR045320 GO:0003700
Dod05g2229 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Dod05g2229 160 SUPERFAMILY beta-beta-alpha zinc fingers 41 71 IPR036236 -
Dod05g2229 160 MobiDBLite consensus disorder prediction 23 39 - -
Dod05g2229 160 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Dod05g2229 160 MobiDBLite consensus disorder prediction 20 39 - -
Dod05g2229 160 PANTHER ZINC FINGER PROTEIN 2 17 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2229 Dod-Chr5 48327781 48329014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2229 1 160 C2H2 Transcription Factor Family AT5G57520 47.619 2.67e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod05g2229 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2229 - - vra:106768043 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2229 05 48327781 48329014 Dod05g2229 05 48327781 48329014 ECH