Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2221 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTGAAGAAAGGACCTTGGTCCCCAGAAGAGGATGCTGCACTAAAAGCCTACATCGAAAAGAATGGAACTGGAGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGCTGAATTACTTGAGACCTAATATCAAGCATGGTGGCTTTACTGAAGAAGAAGACAACACCATCTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCTGCACAGCTACCTGGAAGGACTGATAACGACATCAAGAACTATTGGAACACAAGGTTGAAGAAGAAACTTCTTGGGAGGCGCAAACAATCAAACTTGAACACAAAGGACGCGAATGGAATAGATGATAATAACTCGTGTTCCAATGCCCTAAGCAGCTCAGCTATGGAGAGGCTTCAACTTCACATGCAACTTCAAAGCCTCCAAAACCCTTTCTCTTTCTACAGTAACCCTGCGCTGTGGCCCAAGTTGCATCCTTTCCAGGAAAAGATGATCCAGCAGAGCCTGCAATCTGATATGAATCCTGGCTCAAATAACAACCCCATGATGCAAAATGGTGCTTTGCCTTCCCCTCTTGTGGGCCAAGGACTAAAAGATGATGAGTTCTACAAATCCACAACTGCTTCTGGTGATGTGCTGAATAATCAACAAGATGGGACAATGATCAAAACCCCAAAGGTTGATCTTGTGGCGAATAATCCTATGAATCATAGTTCAGTTTCCTTGATTGGTTCTGGGAACAGCATTCCAATGCATTCAAGCAATAATATTGCACCAAGAGCAGAAAGTGTTGACCAGACTAATGTGGGGATTCAGCAAGTTTGTGCGCTGCAAACAGAACTTAATGACATTCTCAACAACAGAACAATGGGTTACATTCCACAGGTGGTGGATCAGGTGGCTGAATTTGACTGTTTCAGAGAGATGAATGTTTCAAAGGACAACTTGATTTGGTGGTCCAATAATGATTCTGCTGATACCAAATCAGCTTCCTCAAACTCTTGGGATTCATCAACCACTCCAGTTCTTCTGCCAGAGGGGATGTTCCAAGACTATGAACTAGGTTACAGTTTGTAG 1137 0.4398 MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNTICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNLNTKDANGIDDNNSCSNALSSSAMERLQLHMQLQSLQNPFSFYSNPALWPKLHPFQEKMIQQSLQSDMNPGSNNNPMMQNGALPSPLVGQGLKDDEFYKSTTASGDVLNNQQDGTMIKTPKVDLVANNPMNHSSVSLIGSGNSIPMHSSNNIAPRAESVDQTNVGIQQVCALQTELNDILNNRTMGYIPQVVDQVAEFDCFREMNVSKDNLIWWSNNDSADTKSASSNSWDSSTTPVLLPEGMFQDYELGYSL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2221 378 Gene3D - 69 139 - -
Dod05g2221 378 CDD SANT 71 113 IPR001005 -
Dod05g2221 378 PANTHER OS09G0431300 PROTEIN 1 260 - -
Dod05g2221 378 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dod05g2221 378 CDD SANT 16 62 IPR001005 -
Dod05g2221 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dod05g2221 378 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dod05g2221 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dod05g2221 378 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dod05g2221 378 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dod05g2221 378 Gene3D - 7 68 - -
Dod05g2221 378 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod05g2221 378 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 260 - -
Dod05g2221 378 SMART sant 13 64 IPR001005 -
Dod05g2221 378 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2221 Dod-Chr5 48218160 48219780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2221 1 195 MYB Transcription Factor Family AT5G57620 74.257 6.70e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g2221 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2221 K09422 - gmx:778083 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2221 05 48218160 48219780 Dod05g2221 05 48218160 48219780 ECH