Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2213 ATGGGGATTGAGAGAGGAGGCTTAAAGGGCTTCAGGAGTGGGTGGAGCATGCCGCCGAAGCTATGCGACTCGTGTAAGCTGGCTTCGGCGGTGCTCTTCTGCCGCCCTGATTCGGCCTTCCTCTGCATAGCCTGCGACTCCAAAATTCACTGCGCGAACAAGCTCGCGTCGCGCCACGAGCGCGTGTGGATGTGCGAGGTGTGCGAGCAGGCACCCGCAGCTGTCACATGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGCGATTCCGACATCCACTCCGCGAACCCGCTTGCCCGTCGCCACGAGCGCGTCCCCGTGGAGCCCTTCTTCGACTCCGCCGAGTCCATCGTGAAGGCCTCCGCCGCCGCCTTCAGCTTCGTCGTCCCAACCGATGGTGGCGGCTCCGCCGACGACAACGGCATCTCCTCCGATGGTTTCGGGAACGACGACGCGGCCTGGCTCATCCCGAACCCGAATTTCGGGTCAAAGCTCATGGACGCCCCGGACATGAAGTCGAGGGAGATGTTCTTCTCGGAAATGGACCCGTTCCTCGATTTCGATTACTCGAACTCCTTCCAGAACAACAACAGTGCCGGAAACGACAGCGTCGTTCCGGTTCAAACCAAACCCGCTCCCGTTCCGGCTCCGGTGATGAACGAAGGAAGCTGCTTCGACATCGATTTTTGCAGATCGAAGCTCTCCTCGTTTAACTATCCATCGCAGTCTATTAGCCAAAGCGTTTCGTCCTCTTCGCTTGATGTCGGAGTGGTGCCGGACGGGAACACCGTCTCGGAGTTATCGTATTCGTTTGGGCGGAACTGCTCCGATTCGAGTGGGATGGTGGCGGCGGGAGGCGGAGGCGGCGGCATAGCAGCGACGCAGTTGTGCGGGATGGACCGGGAGGCGAGGGTGCTGAGGTACAGGGAGAAGAGGAAGAACCGCAAGTTCGAGAAAACCATTCGATACGCTTCGCGAAAGGCTTATGCAGAGACCCGGCCGAGGATCAAAGGCCGGTTCGCCAAAAGAACCGAAATCGAGTCGGATGTGGACCGCCTCTACAGCCCCGCGGCCGCCGTCCCAGGGTCCCTCATGCTGGACACTCAGTACGGCGTCGTGCCGTCGTTTTAG 1131 0.6074 MGIERGGLKGFRSGWSMPPKLCDSCKLASAVLFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESIVKASAAAFSFVVPTDGGGSADDNGISSDGFGNDDAAWLIPNPNFGSKLMDAPDMKSREMFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQTKPAPVPAPVMNEGSCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSELSYSFGRNCSDSSGMVAAGGGGGGIAATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDVDRLYSPAAAVPGSLMLDTQYGVVPSF* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2213 376 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 376 - -
Dod05g2213 376 CDD Bbox1_BBX-like 65 107 - -
Dod05g2213 376 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515
Dod05g2213 376 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Dod05g2213 376 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 376 IPR045281 GO:0009909
Dod05g2213 376 CDD Bbox1_BBX-like 21 64 - -
Dod05g2213 376 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Dod05g2213 376 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Dod05g2213 376 Pfam CCT motif 301 343 IPR010402 GO:0005515
Dod05g2213 376 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Dod05g2213 376 SMART bboxneu5 17 64 IPR000315 GO:0008270
Dod05g2213 376 SMART bboxneu5 65 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2213 Dod-Chr5 48111032 48113479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2213 1 376 C2C2-CO-like Transcription Factor Family AT5G57660 54.663 1.17e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dod05g2213 zf-B_box 9.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2213 - - gmx:100805693 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2213 05 48111032 48113479 Dod05g2213 05 48111032 48113479 ECH