Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2212 ATGGGACTTCCTTACCCTGCTAAAATACTAGTTGGCCTCTCCTTAGACCCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTATGTCCAATCCAAATGACAGCATTGTAGCCGTGCATGTTCTTGTTGCTGAGGATAAGAAGAAGCGTGTCTCGGTCAGAAGAAGGCAATCACAACTTAGGCAGGCCAAAGCACATGTTATATCTATGCTTGCAGAATTCGCACAGACCTGTTGGTCTAAACAGGTTAATCTGGAGGCCAGAGTTGCATTAAGTTCCACAATAGGTGGAGGTTTAGTGGAGGAAGTCAAGGCCATCAATGCTGACTTTCTTCTTCTACGCGGCTCAAGAAACACAAAAAATAAGATTGGAACTTCCAAAGGAATCACCAAGTATTGCTTTGAGCAGGCACATGATGGCTGTTCCGTGGTCTCAGTTGGGAAGTGTGCAACGGCTGACCAAAGTGCCAATTCAAATTCAAAGCAATCTCAAGGTGATCGCGAACAAGATTCAGGGTGGTTACAGAAGGAAAATAACCAGTGTGACAATGCTACCTCCCCTGCTCTGAAGGAATTTATATCAGAAACCAAGGCGCAGAACCGTTCACCAAGAACGGTACTAGATGCACTCGAGGGACAATCTAACAGCACAGAAGATGATACCTTCAGCACTATGGTATCAAACATCACAGATACCCCTTCACTGGATCAAAAGAATAAGAGCCGATCCAAGCTAAGAAAACCACAATCACCACTGAGGCTCATAGCTTCATTCCTTGGTTCACCATTCAGAAGAAAGAACAACAGATCCAAGAATGAAAAGCGTCAGCCCTTGTTGAAATGCTTCAGCTATGAGCAGATATCCAATGCTACTAATGAATTCCACCAAGATAATTTGGTTGGCCGAGGTGGGTACTCGGAAGTATACAAAGGTGATCTTTCTGATGGAAGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTGGGAGTTATAGGACATGTCTGCCATCCTAATACTGCAGCCTTAGTTGGCTGCTGCATTGAAAATGGGCTCTATCTGGTTTTCAATTACTCTCAGAATGGAAACCTGGCAACTGCATTGCATGGCAAAGCAGGAAATTCACTTGACTGGCCAATAAGATACAAAATTGCAGTTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACCGAATAATCCATCGTGACATTAAAGCCTCCAATGTTCTTCTGGGTCCTGATTATGAACCACAGATCACGGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTAATCCCCGTGGAGGGAACATTTGGATACTTAGCACCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATATTTTTGCATTTGGAGTTCTCCTTCTGGAGATTGTAACTGGAAGGAGACCTGTTGATTCATCAAAGCAAAACCTTCTCCTATGGGCAAAGCCTCACATGGAATCAGGGAATATTGCTGAGCTAGCTGATCCAAAATTGGAAGGTAAATATGATGAAGAGCAACTCTATAGGTTAGTGCTGACGGCTTCATACTGTGTGAGACAAACTGCCATGTGGCGTCCCCCAATGAGTGAGGTGTTAGAGCTGCTGACCAATGGGCACGACTCAGAGGTTGGGAAAAGCTGGAGGATCCCAAAGTTCACTTCTGATGAGTTGGATGATTACTCCATGGTTTTTGGATATGATGTCCCTTCAGACATATCCCTGGAGGATTATTTGTGA 1821 0.4421 MGLPYPAKILVGLSLDPDDSKELLSWAIRVMSNPNDSIVAVHVLVAEDKKKRVSVRRRQSQLRQAKAHVISMLAEFAQTCWSKQVNLEARVALSSTIGGGLVEEVKAINADFLLLRGSRNTKNKIGTSKGITKYCFEQAHDGCSVVSVGKCATADQSANSNSKQSQGDREQDSGWLQKENNQCDNATSPALKEFISETKAQNRSPRTVLDALEGQSNSTEDDTFSTMVSNITDTPSLDQKNKSRSKLRKPQSPLRLIASFLGSPFRRKNNRSKNEKRQPLLKCFSYEQISNATNEFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTAALVGCCIENGLYLVFNYSQNGNLATALHGKAGNSLDWPIRYKIAVGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDIFAFGVLLLEIVTGRRPVDSSKQNLLLWAKPHMESGNIAELADPKLEGKYDEEQLYRLVLTASYCVRQTAMWRPPMSEVLELLTNGHDSEVGKSWRIPKFTSDELDDYSMVFGYDVPSDISLEDYL* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2212 606 SMART serkin_6 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2212 606 Gene3D HUPs 5 148 IPR014729 -
Dod05g2212 606 SUPERFAMILY Protein kinase-like (PK-like) 272 563 IPR011009 -
Dod05g2212 606 Gene3D Phosphorylase Kinase; domain 1 259 372 - -
Dod05g2212 606 MobiDBLite consensus disorder prediction 196 253 - -
Dod05g2212 606 MobiDBLite consensus disorder prediction 196 238 - -
Dod05g2212 606 PANTHER OS08G0249100 PROTEIN 6 596 - -
Dod05g2212 606 CDD USP_Like 8 148 - -
Dod05g2212 606 ProSiteProfiles Protein kinase domain profile. 296 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2212 606 MobiDBLite consensus disorder prediction 156 182 - -
Dod05g2212 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Dod05g2212 606 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Dod05g2212 606 Pfam Protein kinase domain 296 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2212 606 Gene3D Transferase(Phosphotransferase) domain 1 374 576 - -
Dod05g2212 606 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 115 - -
Dod05g2212 606 PANTHER OS08G0249100 PROTEIN 6 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2212 Dod-Chr5 48094308 48097762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2212 284 602 Trihelix Transcription Factor Family AT1G70460 38.872 2.19e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dod05g2212 Pkinase 6.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2212 - - ccaj:109809416 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2212 05 48094308 48097762 Dod05g2212 05 48094308 48097762 ECH