Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2199 ATGGCCAAGATCTTTCTACACAGAGGGGACACCTTTTTGTCTCCATCAGAACAGCCAGCCCCAGCACCCTTTTTTCTTCCTCAGCCAAGCCCACCTTTCCCTCCCCTTACTGTTCGATCTGATAATAGCTTGGACTCCTTCAACAAGGATAAGGCCTTAAAGGTTAGTCCAACCATACTCCTAATAATCATAATTCTGGCTATTGTTTTCTTCGTTTCTGGCTTGCTGCACCTCCTTGTTAGGTTCCTGTGGAGGCCTCAGAATAGGGACCCCGATGAGTTGGACAATGTCACTGCACTCCAAGGGCAGTTGCAGCAACTCTTCCACCTCCATGATGCTGGTGTTGACCAGTCCTTCATTGACACCCTCCCTGTGTTCCACTACAAGGCCATCATAGGATTGAAGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTGAACCTGAGGACAAGCTTAGGTTGTTGCCCAAATGCAGCCATGCTTTTCACATGGAGTGTATTGACAGATGGCTCTTGTCTCACTCCACTTGTCCTCTTTGTAGAGCAAGTTTGCTACCTGATTTCTCAGCAAACAATAGCTGTTCCCCTATTGTTCTTGTCCTGGAATCTGGGAGTGAGAGTTCTAGGGAGATTGTTTCTGAAAGAGAGGCTGCTGCTGTTGGAAGAACAAGTTCTGTCATGACATCAAATTCTCGCCTTGGTTGCCATGGAGACAGTGAATTCGGGTCAACCCGGATTGATTTGCAACAAAAATCGGGTGAGTTGACTCCAAGTGACAACAATCTTGATCCAAACTTAGGGGATGGTGTAGAAAAAGTGGTCACTGTTAAGCTTGGGAAGTTCAGGAGTGTGGATGTTGATGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGAAGGAAGTAGTAGCACAAACAATGTGGACGCTAGGAGGTGCTTTTCAATGGGGTCATTTGCTTATGTTATGGATGAGAGTTCTTCACTTCAGGTACCTATAAGGACCCCAATCAAGAAGCAGTCAAGTAACAAGAAGTGTGTTTTTCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAACAGATTTCAGATTCGCAGGCTTTGATGTAACTAGAGTTGAGGACATTGCTGGGGTTGGGAGTAGTACTTGTAATGGAAGTGGTGGGGCTGCAATTGGAAGGAGCAGGAAAGAGAGCTTCTCTATATCAAAGATTTGGCTGAGGGGGAAGAAGGAGAAGCCAAATGCAGTGGCAGATTCTTCCAGAAGAGCTGTTTCCTTTCGGTTCCCAGCACAGCAAAGTATTGTTGCTGCTACTAGTGATGATTTGAATTTGAAGGGCAATAATAAGAATGGGAAATTTGACACAAGGAGCACCATTTCTGAGATGGATTTTGGGAAGTGGGAGAATGGAGGGAGTGAGTTTGGTGGCTATGATGAGGAAAGCCAGAGCTGCTATAGCATTGAATCTCAAGCCAGAGCACCTTCCTTTGCTAGGAGGACTTTGCTTTGGCTCACCGGAAGACAGAACAAGGTTGTTCACTCATCTTCTGCTTCCAATGTCTAG 1581 0.463 MAKIFLHRGDTFLSPSEQPAPAPFFLPQPSPPFPPLTVRSDNSLDSFNKDKALKVSPTILLIIIILAIVFFVSGLLHLLVRFLWRPQNRDPDELDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDRWLLSHSTCPLCRASLLPDFSANNSCSPIVLVLESGSESSREIVSEREAAAVGRTSSVMTSNSRLGCHGDSEFGSTRIDLQQKSGELTPSDNNLDPNLGDGVEKVVTVKLGKFRSVDVDGGGGGGGGGGEGSSSTNNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSNKKCVFPLTPGHRPAMSECDCESRTDFRFAGFDVTRVEDIAGVGSSTCNGSGGAAIGRSRKESFSISKIWLRGKKEKPNAVADSSRRAVSFRFPAQQSIVAATSDDLNLKGNNKNGKFDTRSTISEMDFGKWENGGSEFGGYDEESQSCYSIESQARAPSFARRTLLWLTGRQNKVVHSSSASNV* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2199 526 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Dod05g2199 526 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 22 426 - -
Dod05g2199 526 MobiDBLite consensus disorder prediction 286 306 - -
Dod05g2199 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 187 IPR013083 -
Dod05g2199 526 SMART ring_2 140 181 IPR001841 -
Dod05g2199 526 SUPERFAMILY RING/U-box 119 191 - -
Dod05g2199 526 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 22 426 - -
Dod05g2199 526 CDD RING-H2_PA-TM-RING 139 182 - -
Dod05g2199 526 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2199 Dod-Chr5 47777930 47780084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2199 39 524 C3H Transcription Factor Family AT2G18650 44.311 4.43e-102 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2199 - - gmx:100797283 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2199 05 47777930 47780084 Dod05g2199 05 47777930 47780084 ECH