Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2174 ATGCCCGATTTGGGAAATTTGTCTCTCTCCGAGACACTCGCTCTCTCCCACCACCGCCCCGACGCAGCTGACCCACCTGACCTCACCACTTCCCTCCATCGCTCCCCACTCAAAACCCTAGCTCCAGCTCCCAACGCCGTCGTTTCGACTCGCTCCAGCACTATACCACCCATTGTTCAGCAAGACGATCCTCGCGGTCACAAAGCTCAAGCTACTGAAATTAAGGTTCCGACCGCGAAAGCAGCTAATGGCAGTGGCAATGGCAAGGGTTTGGAGGATCGCCTCAGAGACTGTTCTCAGAAGTGGAACAAATTGGTTTCCGAGGATCACAATCTTGAGTTCTCTCTTCCCTTCCTCGTTGGTGCTCCGAAGATGGCTGAATGCCTTGTTTGCCATCGTTCGGTCTGCCCCGGAGAGGAGCTATCTTGTTCTGTTCGTGGCTGTGAAGGAATCTACCATTTCCAATGTGCAAAAGAAGCTATGGGGGTCCCAAATCCGAAAAAATTCAAGTGCTCACGACATGTATGCTTCGTTTGCAAAAAACCAATACAGTTGCGGTGTGTGCGTTGCACAGTTGCATTTCATCAGAAATGTGCCCCATGGCCAGAAGCTGTGATGTGTCTAAAAGATCGTCCTGGACATGCTGTTTGTTGGAGGCATCCTTCTGATTGGCATCTGGATAGAAAGCCTGAAGTTTCAACAAGTGACATAAAGGAAATATTTAGTCGCTTGCCTCTTCCCTATGTCAACGAGGATTTCAAGATTGATCTTACTTGGAAAGAAATGGAGAGTAAGATGGAACAACCACCATATGTGCACATAAGACGCAACATATACTTAGTCAAGAAGCGTCACTACGCAGATGATGGTGCAGGGTGCACCAGCTGCGGTTCTACCTGCTCCGATGATTGTGTGTGCAGGGTCCAATGCATAAGTTGCTCAAAATTGTGTCGCTGCTCGGAGAATTGCCGTAATCGGCCATTTCGCAAGGAGAAAAAGATTAAGCTTGTGAAGACTGAACTTTGTGGATGGGGAGTAGAGACTGCTGAAACCGTTGATAAAGGCGAATTTATAATTGAGTACATCGGAGAAGTTATTGATGATGCTCTATGTGAACAAAGGCTTTGGGACATGAAATACAACGGTGCACAGAATTTTTACATGTGTGAGATTCGGAAAGACTTTACAATTGATGCAACTTTCAAAGGAAATCTTTCACGCTTTTTAAACCATAGCTGTGATCCCAACTGTGTTTTGGAGAAGTGGCAAGTTGATGGTGAAACACGCGTTGGTGTATTTGCGTCCCGTTCAATAGAAGCCGGAGAGCCGTTAACATATGATTACAGATTTGTGCAATTTGGTTCAGAGGTAAAATGCCAATGTGGTGCCCCAACTTGTCGAGGCTTTCTAGGGACGAAAAAGAAAATTGTCAAGGTAGATCTCTGTTGGGGCTCAAAACGTAAGAGAACTTCAGCTGCATGTCCTAAGATAGAAACACCTTTATGA 1506 0.4635 MPDLGNLSLSETLALSHHRPDAADPPDLTTSLHRSPLKTLAPAPNAVVSTRSSTIPPIVQQDDPRGHKAQATEIKVPTAKAANGSGNGKGLEDRLRDCSQKWNKLVSEDHNLEFSLPFLVGAPKMAECLVCHRSVCPGEELSCSVRGCEGIYHFQCAKEAMGVPNPKKFKCSRHVCFVCKKPIQLRCVRCTVAFHQKCAPWPEAVMCLKDRPGHAVCWRHPSDWHLDRKPEVSTSDIKEIFSRLPLPYVNEDFKIDLTWKEMESKMEQPPYVHIRRNIYLVKKRHYADDGAGCTSCGSTCSDDCVCRVQCISCSKLCRCSENCRNRPFRKEKKIKLVKTELCGWGVETAETVDKGEFIIEYIGEVIDDALCEQRLWDMKYNGAQNFYMCEIRKDFTIDATFKGNLSRFLNHSCDPNCVLEKWQVDGETRVGVFASRSIEAGEPLTYDYRFVQFGSEVKCQCGAPTCRGFLGTKKKIVKVDLCWGSKRKRTSAACPKIETPL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2174 501 SMART PHD_3 127 175 IPR001965 -
Dod05g2174 501 SMART PHD_3 176 221 IPR001965 -
Dod05g2174 501 Gene3D SET domain 249 488 IPR046341 -
Dod05g2174 501 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 65 497 - -
Dod05g2174 501 MobiDBLite consensus disorder prediction 45 59 - -
Dod05g2174 501 SMART set_7 332 455 IPR001214 GO:0005515
Dod05g2174 501 SMART PostSET_3 455 471 IPR003616 -
Dod05g2174 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 223 IPR013083 -
Dod05g2174 501 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 498 IPR025787 -
Dod05g2174 501 PANTHER SET DOMAIN PROTEINS 65 497 - -
Dod05g2174 501 ProSiteProfiles Post-SET domain profile. 455 471 IPR003616 -
Dod05g2174 501 CDD SET_ASHR3-like 333 471 - -
Dod05g2174 501 MobiDBLite consensus disorder prediction 39 93 - -
Dod05g2174 501 ProSiteProfiles AWS domain profile. 288 332 IPR006560 GO:0005634|GO:0018024
Dod05g2174 501 Pfam SET domain 343 448 IPR001214 GO:0005515
Dod05g2174 501 ProSiteProfiles SET domain profile. 332 449 IPR001214 GO:0005515
Dod05g2174 501 SUPERFAMILY SET domain 256 461 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2174 Dod-Chr5 47499636 47505942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2174 313 470 C2H2 Transcription Factor Family AT2G23740 36.313 6.40e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dod05g2174 SET 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2174 - - aprc:113859744 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2174 05 47499636 47505942 Dod05g2174 05 47499636 47505942 ECH