Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2173 ATGGGAAAAACATCACAACAGTCAATTTCCAAAAATAATGCATGCAATGCAGGCAATAATAATAACCTTAATGCAACTAATACCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCCAGAGACTCCCCACCTCAACGCAGCTCAATTTACAGAGGAGTCACTAGGCACCGGTGGACAGGCCGGTATGAAGCCCATCTGTGGGATAAGAATTGCTGGAATGAGTCTCAGAACAAGAAGGGACGACAAGTCTACCTTGGTGCTTATGACGATGAGGAGGCGGCAGCACATGCTTATGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGGTATCGAACTACCAGAATGAACTGAAGGAAATGGAGGGTCAATCAAGGGAGGAATATATTGGATCACTTAGGAGGAAAAGCAGTGGATTTTCTCGGGGAGTTTCTAAATATAGAGGTGTTGCAAGACATCATCATAACGGAAGATGGGAGGCTCGAATTGGCAGAGTTTTTGGGAATAAGTATCTTTATCTCGGAACTTATGCTACCCAAGAAGAAGCTGCCACGGCCTATGACATGGCTGCTATTGAATATCGTGGACTTAATGCTGTCACCAATTTCGACCTTAGCCGTTACATTAAATGGCTTAAACCCAACAACAGCAACAACAACGATAATAGCAGGATTAGTTTTAATCTTTCTGATGAAGTAATTAACCCTAATTCTAATACCAACTTCACCCCAAACCTTAATAAAGAACAAGAATTTGGCTACCTACACAATCAAGAACCATTCAATAATATTGAAGAGGATACGACGTTGGTTCAGCCTAGACCAACTGGTGCCACGTCAGCCCTAGGGCTTCTGCTCCAATCATCCAAGTTTAAGGAAATGATGGAGATGACATCTGTGACTAATCCATCAACACCGCCAGAGTCTGAGTTGCCACAGTGTACATTCCCTGATGACATTCAAACTTACTTTGAGTGTGAAGATTCCAATAAATATGAGGAAGGAGACGATGTCATATTCAACGAGCTCAACTCCTTTGTGCCAATGTTCCATTGTGATGACTTCGAGAATTGA 1089 0.4242 MGKTSQQSISKNNACNAGNNNNLNATNTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPVSNYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNSNNNDNSRISFNLSDEVINPNSNTNFTPNLNKEQEFGYLHNQEPFNNIEEDTTLVQPRPTGATSALGLLLQSSKFKEMMEMTSVTNPSTPPESELPQCTFPDDIQTYFECEDSNKYEEGDDVIFNELNSFVPMFHCDDFEN* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2173 362 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 CDD AP2 48 117 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 SUPERFAMILY DNA-binding domain 48 117 IPR016177 GO:0003677
Dod05g2173 362 CDD AP2 150 211 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 Pfam AP2 domain 150 201 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 Pfam AP2 domain 49 107 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 348 - -
Dod05g2173 362 MobiDBLite consensus disorder prediction 1 50 - -
Dod05g2173 362 SUPERFAMILY DNA-binding domain 150 211 IPR016177 GO:0003677
Dod05g2173 362 Gene3D AP2/ERF domain 150 211 IPR036955 GO:0003700|GO:0006355
Dod05g2173 362 Gene3D AP2/ERF domain 49 117 IPR036955 GO:0003700|GO:0006355
Dod05g2173 362 MobiDBLite consensus disorder prediction 1 32 - -
Dod05g2173 362 SMART rav1_2 49 121 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 SMART rav1_2 151 215 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 ProSiteProfiles AP2/ERF domain profile. 49 115 IPR001471 GO:0003700|GO:0006355
Dod05g2173 362 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2173 Dod-Chr5 47493878 47496586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2173 45 213 AP2-EREBP Transcription Factor Family AT5G57390 73.964 1.99e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod05g2173 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2173 K09285 - gmx:100804555 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2173 05 47493878 47496586 Dod05g2173 05 47493878 47496586 ECH