Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2170 ATGGCAGGGTGTCTGGCTGCAATGAAAGTGCCTAGCCCAACATTCCAGCAATCTGCTGTTTCGGATCCAAAGACTCGACTCTCACCCACTTCTTCTTCTTCAATTCGCTCCAAGACAAAAATTGTGCGAAGGCTAAAACATGGGAGCAGTGGCAACAACAAAAGCAGTGGTCGTTCCTCCTCCTCCTCCTCCTTCTCATCGTCATCATCGATGAAGCAGCAGCTCCATCCCTATGACAACATCTCGTCTAACAGTCCTTACTACCAAGGCCTCTTGGACCAATCCCTTGCCATCTTGGAAGAGATTAATGCTGATGCACCATGCACTCAACCTCACAGCGCCCATCCTTGCTACCCTGCTTTCACCAGCCACAACCTCTCATCTGGCGGCCACAGTCCCTACTACAAAGGCCTTACAGATTATTCGCTTGTTATTAGTTCTTGGAGCCGCATTCATGAGAATAAGACCCATAACACTCCTCTTGATCCTGTTGTTGCTGCAGGCACTGCCACTGTCGCCTCCAACCCCCTTTCATACCAGTCCAGTCCTTACTATCGGGGCCTCATTGATTACTCCCTTGTTCTTCATGCCCCACAGCTTCCACCTCACTCTGCCACTAGGCCAGATCAGCAAGACATTCTTGTGGAAAACCTCACACCACCACCACCATGTGCATTGTCATCACCCTCCACTTTGAATGACTTGATGATAATCATGGCCGATGCTGATGATGATGGCTTCTTAACTGAAAAGAATAAGCCACTAACACCGAGGGTCGGGGATATTGATCGGAGAGCGATCTCAGAAGAAAGCACGGTTGGGAGTGCCGCCACCAACCCGCCGCCCCTTTCGTGCTGCCTCATTGATTACTCCCTTGCCCTTCCTCCCCCACACCAACAGTCTATGTTGCCCATGCCCTTGTACTTGAAAAGCACGCCTGACATTCTTGAAAACCTCACACCACCAACGTGTGCATCAACACCCTCCACTTTGAATGAGTTCATGATGACAACCAAGGGCTATGATGCTGATGGCTTCTTAACTGAAAAGGATCCACTGAGGGATATTGAGATGAGAGTAGTATCCAAACAAGGCATGATTGGGACTGTCTTTTTTTATGAGCAACCAATCTCGGAGGAGATGGAGGAATTGGTGACGAAGGGGGCCGGTGATGATACTGGCTCGGTCAATGAAGATCAGAAGACAGTACCAGATCAGGCAATCATGGTTGAGAATGTAACATTAGAAGAAGAAAATGCTGACAAAACAAGCTTGAAGGAGGTGGAACAACTGATGACAAATGGGGATGCAGAGTCAGTGATTAATGCACAAGAGAAGCCATTGAGGGAGAGAGTATCAGAGGTAGCAAGTAAGGTTGAGAGTGAGGATATGGAGTTGGGTATTGAAGAAGAGAAGCCTTTGAGGGAGAGAGTATTAGAGGCAAGTAATGTTGATGAGGAAAAACTTGCAGACACAACAACTAGTTTGAAGGAGATGGATGTGGGCAGTGAAAAGGAGAAGCCCCTATTTGTTTCCGAACAAACAGTTGCATCATCAGACTTGTTACCATGCAAAGACGAAGGAAATGTTAGTGTTGGGGAGGTGAAGTCAAAGGATACAGCAGAGGAAGGAAGTGTGTACGAGTATACATGGGCAACCAAACACCAGCCCGTGACCTTGGAAGGTTTCATCTGCAATAGGGATAAAGCACTTCAACTCAAAGCATTGGTAAGAGAAGGTTGTGGATGTAACCATTTCATATTTGAAGGACCACCAAATGTAGGAAAAAGATCCATGATCCGGGCTATGCTTCGCGAGGTATTTGGCGCTGAGAGAGTGCAGGTCATAAAAGAATGGAAAGACTTCAACTTTAAGGGAGAAATGGTTGAAAAGCTCCAAGTGCAGATAAAGAAATCACAACATCATGTAGAGGTCAATATCTCAGAGACGAAGGGATATGAGAAGCATGTAATTACTGATTTATTCAAGGAAACATATGGCAAGATCATAAATAACTCACTGCCTTGTAGCCCAGAAAACTGCCAAGCAATAATTTTGAATGAGGCCGAGAAGCTTTCGATAGAATCCTTGTTGTATATTAAGTGGCTACTAGAAAAGTATAAAGGGTGCAATAAGGTGTTCTTTTGTTGTTCCGACGACTCAAAGCTCCAACCTGTGAAACCACTTTGCGCCACTGTACGTCTTTCACCACCTTCAAGCGAAGAGATTCTTAAGATTTTGGATTATATTGGAGAACAAGAAGGAATAAAATTATCATACAACATAGTCAAGAAGATAATCTTGAGGTCAAAAAACAATCTCCGCCAAGCCATTCGTTCACTGGAAGCCACTTGCCGAAACAAGGTTGCCCTCAAAGACGACGATGTAATTTTAACTGGATGGGAGTTTGAAATTTTGAATATTGCCAAAAATATATTGGAAGAGCAAAGTCCAAGACAATTGTACCTCATTCGTAGAAAGTTACGAAGACTTATGATTCATGATGTTCGCCCCAGCTTTGTTTACAAGTTCTTGGTGGCAGAGTTAACGACTCTTGTTGATGCCTCGCTGCGTTCGGGAGTTGCCAAACTCGGCAAGCAGTACAGCGACGTACGTAAAACCATAAACTGTTGA 2634 0.4518 MAGCLAAMKVPSPTFQQSAVSDPKTRLSPTSSSSIRSKTKIVRRLKHGSSGNNKSSGRSSSSSSFSSSSSMKQQLHPYDNISSNSPYYQGLLDQSLAILEEINADAPCTQPHSAHPCYPAFTSHNLSSGGHSPYYKGLTDYSLVISSWSRIHENKTHNTPLDPVVAAGTATVASNPLSYQSSPYYRGLIDYSLVLHAPQLPPHSATRPDQQDILVENLTPPPPCALSSPSTLNDLMIIMADADDDGFLTEKNKPLTPRVGDIDRRAISEESTVGSAATNPPPLSCCLIDYSLALPPPHQQSMLPMPLYLKSTPDILENLTPPTCASTPSTLNEFMMTTKGYDADGFLTEKDPLRDIEMRVVSKQGMIGTVFFYEQPISEEMEELVTKGAGDDTGSVNEDQKTVPDQAIMVENVTLEEENADKTSLKEVEQLMTNGDAESVINAQEKPLRERVSEVASKVESEDMELGIEEEKPLRERVLEASNVDEEKLADTTTSLKEMDVGSEKEKPLFVSEQTVASSDLLPCKDEGNVSVGEVKSKDTAEEGSVYEYTWATKHQPVTLEGFICNRDKALQLKALVREGCGCNHFIFEGPPNVGKRSMIRAMLREVFGAERVQVIKEWKDFNFKGEMVEKLQVQIKKSQHHVEVNISETKGYEKHVITDLFKETYGKIINNSLPCSPENCQAIILNEAEKLSIESLLYIKWLLEKYKGCNKVFFCCSDDSKLQPVKPLCATVRLSPPSSEEILKILDYIGEQEGIKLSYNIVKKIILRSKNNLRQAIRSLEATCRNKVALKDDDVILTGWEFEILNIAKNILEEQSPRQLYLIRRKLRRLMIHDVRPSFVYKFLVAELTTLVDASLRSGVAKLGKQYSDVRKTINC* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2170 877 MobiDBLite consensus disorder prediction 7 78 - -
Dod05g2170 877 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 415 871 - -
Dod05g2170 877 Gene3D - 739 799 - -
Dod05g2170 877 Gene3D - 800 875 - -
Dod05g2170 877 SUPERFAMILY post-AAA+ oligomerization domain-like 800 869 IPR008921 GO:0003677|GO:0006260
Dod05g2170 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 795 IPR027417 -
Dod05g2170 877 MobiDBLite consensus disorder prediction 11 38 - -
Dod05g2170 877 Gene3D - 549 738 IPR027417 -
Dod05g2170 877 PANTHER OS10G0574500 PROTEIN 415 871 - -
Dod05g2170 877 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2170 Dod-Chr5 47462618 47470019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2170 551 868 Core DNA Replication Machinery Family AT5G27740 31.231 4.73e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2170 K10756 - gmx:102664389 554.673