Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2162 ATGTTCCTATTTTTCTTTCTGAACATTGTTCATTCTAGCGTTCATGGTGAGCAAAATGCTGCCCTTGTGAATGGTAAAAGTTCACTTGTTTCATTCATGTCAGGAATTGTTTCTGACCCAGAAAACTCTCTACAGAGTTGGAAGTCACCTGGTGTTCATTTTTGTGACTGGTCAGGAGTCAAATGCAACAATGCAAGTGACATGATCATAAGCTTGACCTTAGTGGAAGGGGTCATTCCCTCACAGTTTGGTTTACTTCACAACTTGTCCTACCTTGACCTTGAGAGCAATCAACTTGAAGGAGAGATTCCACCACCACTTTTCTGCAATGTGACTTCTTTGAGTTATATAGACCTCTCCAATAATTCCTTAGGAGGAGAAATCCCCTTGAGCAATGAGTGTATCCTTGAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACCATCTTGTTGGTCAAGTTCCTTTAGCTCTTTCAAACTCCACTGAACTTACATGGCTTGATTTGAAGTCAAATATGTTGAGTGGAGAGCTTCCATCTGAGATAGTACATAACTGGCCACCATTACAGTTCCTTTACTTATCATATAATGATTTTGTTAGTCATGATGGTAACACCAACCTTGAACCTTTCTTTGCTTCCTTGATGAACTTAACTAACTTTCAAGGACTCGAATTGGCGGGAAATAGTCTTGGTGGGAAGCTACCTCATATTATTGGTGATCTTCCTACCAGTCTGCAGCTGCTTCACCTAGAAGAAAATCTCATATATGGCTCTATACCCCCACAAATTGGCAACCTTGTCAATCTTACTTTCTTGAATTTGTCTGGTAACCAATTAAATGGATCAATCCCTTCAAGTCTTTGCCACATGAGTAGGCTAGAGAGAGTTTATTTGTCAAACAATTCGCTACATGGTGAGATTCCCTCAGCCCTTGGTGACATCCAACATCTGGGCCTTCTAGACTTGTCTAGAAACAAGCTTTCTGGTTCAATACCAGATAGTTTTGCTAAGCTCCCTCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACAATTCCACCAAGTCTTGGAAAATGTGTGAACTTGGAGATTCTAGACTTATCTCACAACAGGATTTCAGGGCAGATTCCTGCTGAAGTTGCTGCCTTGACTAGCTTGAAACTATACTTGAATTTATCAAGCAATAACTTGCATGGCCCTTTACCATTAGAACTCAGCAAAATGGACATGGTGCTAGCTATTGATCTATCCATGAACAATCTCTCAGGAAGAATCCCACCACAACTGGACAGTTGCATAGCACTAGAGTACCTCAACCTCTCTGGTAATTCCTTGGAAGGCCCTCTCCCATATGCATTAGGCCAATTGCCTTATATTGAAGCATTTGATGTGTCTTCAAATCAGTTGACAGGGATAATACCAGAGTCCATGCAGTTGTCTTCCACTCTCAAGAGACTTAACTTCTCTTTCAACAAATTCTCAGGGAGTGTTTCAAACAAGGGAGCATTTTCATCTCTGACAGTAGACTCTTTCCTGGGAAATGAAGGTCTTTGTGGCCAAGTAGAAGGCATGCAAAGCTGCCACAAGAAACGTAGCTATCACTTTGTGTTCTTATTAATTCCCGTGCTATTCTTTGGCACCCCTCTACTGTGCATGTGTGGTAGGTACTCCATGGTAATCAAGTCAAGAGTGAGAAAGAGATTTGAAATTGTTAACAAGGGTGACTTGAAGGATGAGCAAGATGAAACAAAAGAGCTCAAGTATCCGAGAATTTCATATGGACAACTTAGAGAAGCCACTGGAGGCTTCTGTTCTTCAAGGCTAATTGGTTCAGGCCAGTTTGGACAAGTCTACAAAGGAGTCCTCTTAGATAATACAAGAGTAGCAGTGAAGGTATTAGATACAGCAACAGCCGGTGAGATTTCAAGGAGCTTTAGGAGGGAATGCCAAATCCTCAGAAGGATCAAGCACAGAAATTTGATAAGGATCATCACAATTTGCAGCAAACCAGGATTTAAGGCTCTTGTGCTTCCACTTATGCCAAATGGTAGCCTTGAGAGGCACCTATATCCAAGCCATGGGTTAAGCCAAAGGTTGGATGTGATACAGTTGGTGAGGATCTGCAGTGATGTAGCTGAGGGATTGTCCTATCTGCACCATTTCTCTCCGGTGAAAGTAGTGCACTGTGATCTTAAGCCTAGCAATATACTCCTTGATGAAGATCTGACAGCTTTGGTTACTGATTTTGGAATTGCAAGGCTTGTAAAAGGTGATGACAGTGCCTCCACCAGTAACTCAGCATCCTTCAGTTCAACACATGGCTTGTTATGTGGTTCTGTTGGCTATATAGCTCCTGAATATGGAATGGGAAAACATGCTTCAACTCAAGGTGATGTTTACAGTTTTGGAGTGCTTCTGTTAGAAATCGTGACAGGTAGACGCCCCACAGATGTCCTCATCCATGAAGGCTCTAGCTTGCATGAGTGGGTTAAGAGACAATATTCACACCAAGACAAGCTTAGAAACATGGTTGAACAAGCATTGCAAAGGTACTCTCCTACTGGTGTGCCAAGCCATCAAAACAAAACTAGGCAAGATGTTGTACTTGAACTTGTGGAGCTGGGGCTTCTCTGCACACAGCAGAATCCTTCAACAAGACCAAGCATGCTGGATGTAGCCCAAGAGATGGGAAGGTTAAAGGACTACCTTGCTAACCCAAATTCCATGCTCATTGAACTTGATCCCAAGATTAATTCTTCATGCAGCGGAGAAAGTTTAGTTAGCAACTAG 2799 0.4209 MFLFFFLNIVHSSVHGEQNAALVNGKSSLVSFMSGIVSDPENSLQSWKSPGVHFCDWSGVKCNNASDMIISLTLVEGVIPSQFGLLHNLSYLDLESNQLEGEIPPPLFCNVTSLSYIDLSNNSLGGEIPLSNECILEELRFLLLWSNHLVGQVPLALSNSTELTWLDLKSNMLSGELPSEIVHNWPPLQFLYLSYNDFVSHDGNTNLEPFFASLMNLTNFQGLELAGNSLGGKLPHIIGDLPTSLQLLHLEENLIYGSIPPQIGNLVNLTFLNLSGNQLNGSIPSSLCHMSRLERVYLSNNSLHGEIPSALGDIQHLGLLDLSRNKLSGSIPDSFAKLPQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNRISGQIPAEVAALTSLKLYLNLSSNNLHGPLPLELSKMDMVLAIDLSMNNLSGRIPPQLDSCIALEYLNLSGNSLEGPLPYALGQLPYIEAFDVSSNQLTGIIPESMQLSSTLKRLNFSFNKFSGSVSNKGAFSSLTVDSFLGNEGLCGQVEGMQSCHKKRSYHFVFLLIPVLFFGTPLLCMCGRYSMVIKSRVRKRFEIVNKGDLKDEQDETKELKYPRISYGQLREATGGFCSSRLIGSGQFGQVYKGVLLDNTRVAVKVLDTATAGEISRSFRRECQILRRIKHRNLIRIITICSKPGFKALVLPLMPNGSLERHLYPSHGLSQRLDVIQLVRICSDVAEGLSYLHHFSPVKVVHCDLKPSNILLDEDLTALVTDFGIARLVKGDDSASTSNSASFSSTHGLLCGSVGYIAPEYGMGKHASTQGDVYSFGVLLLEIVTGRRPTDVLIHEGSSLHEWVKRQYSHQDKLRNMVEQALQRYSPTGVPSHQNKTRQDVVLELVELGLLCTQQNPSTRPSMLDVAQEMGRLKDYLANPNSMLIELDPKINSSCSGESLVSN* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2162 932 Pfam Leucine rich repeat 291 351 IPR001611 GO:0005515
Dod05g2162 932 ProSitePatterns Protein kinases ATP-binding region signature. 612 634 IPR017441 GO:0005524
Dod05g2162 932 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Dod05g2162 932 Pfam Leucine Rich Repeat 438 456 IPR001611 GO:0005515
Dod05g2162 932 Pfam Leucine Rich Repeat 268 289 IPR001611 GO:0005515
Dod05g2162 932 SUPERFAMILY L domain-like 28 293 - -
Dod05g2162 932 SMART LRR_typ_2 314 337 IPR003591 -
Dod05g2162 932 SMART LRR_typ_2 266 290 IPR003591 -
Dod05g2162 932 SMART LRR_typ_2 338 362 IPR003591 -
Dod05g2162 932 SMART LRR_typ_2 86 110 IPR003591 -
Dod05g2162 932 SMART LRR_typ_2 363 386 IPR003591 -
Dod05g2162 932 Gene3D Ribonuclease Inhibitor 24 136 IPR032675 -
Dod05g2162 932 Pfam Leucine Rich repeat 362 377 IPR001611 GO:0005515
Dod05g2162 932 Pfam Protein kinase domain 609 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2162 932 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 16 74 - -
Dod05g2162 932 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 73 903 - -
Dod05g2162 932 Gene3D Transferase(Phosphotransferase) domain 1 683 913 - -
Dod05g2162 932 SUPERFAMILY L domain-like 268 522 - -
Dod05g2162 932 Gene3D Ribonuclease Inhibitor 137 533 IPR032675 -
Dod05g2162 932 SMART serkin_6 606 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2162 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Dod05g2162 932 ProSiteProfiles Leucine-rich repeat profile. 364 386 IPR001611 GO:0005515
Dod05g2162 932 PANTHER OS04G0122200 PROTEIN 16 74 - -
Dod05g2162 932 SUPERFAMILY Protein kinase-like (PK-like) 587 897 IPR011009 -
Dod05g2162 932 Gene3D Phosphorylase Kinase; domain 1 576 681 - -
Dod05g2162 932 CDD STKc_IRAK 612 902 - -
Dod05g2162 932 PANTHER OS04G0122200 PROTEIN 73 903 - -
Dod05g2162 932 ProSiteProfiles Protein kinase domain profile. 606 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g2162 932 ProSiteProfiles Leucine-rich repeat profile. 268 290 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2162 Dod-Chr5 47397442 47400785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2162 26 904 Receptor kinase-like Gene Family AT3G47570 32.966 5.22e-138 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dod05g2162 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2162 - - lang:109346572 1453.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2162 05 47397442 47400785 Dod05g2162 05 47397442 47400785 ECH