Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2140 ATGCTTGACGGTGGTTACAAGTCAAAATACATGGGTGGCCAGCGGGACAAATTGTTGAGGTTGGAAGTCTTGGATTCTAGAATATCTTCATCTACTGATGCTGGAGTTAAAAAAGCTGGATTCAGTATTGATAAATTAAGCCATGGTGGTCATGGAAGCAGCAAAACCTCTAGGTCTTTTAAAATAGGAATGAGAAAGGGATCTGAAGGACTGAAGTCAATTGGTCGATCACTCGGATTTGGGGTATCTAGGGCAGTGTTCCCAGAAGACCTTAAAGTGTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTATGGAATAAACTTTTTGTTATCTCATGCATATTGTCTGTGTCTGTGGATCCATTGTTCTTTTATCTTCCTGTCATCAATGATCAAGATCAAGTACACTGTCTTGGCATAGACCGAAAGCTGGCTATCACAGTAACCACCTTAAGGACAGTCACTGATGCATTCTATCTCATACACATGGCACTTCAATTTCGTACTGCCTATATTGCTCCATCATCTCGTGTCTTTGGACGGGGTGAGCTTGTCATAGATTCGGCACAGATTGCAAAGCGATACTTGCGGCGGTATTTCATCATTGATTTCCTATCTGTGTTGCCCTTACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCGGATGTACTAGCAACAAAGCAGGCCTTGCTGTTTATTATCTTGCTTCAGTATGCTCCCAGATTTTTCCGAATGGTACCATTAACTTCAGAGCTTAAGAGAACGGCTGGTGTCTTTGCGGAAACTGCATGGGCTGGTGCTGCATATTATTTGTTGTTGTACATGCTTGCCAGTCATATAGTTGGGGCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTATTGCTGGCAGAAGGCCTGCCGTCACAATGGGTTCAACAAAAACTTCCTCTATTGTGGCAATCAAAACATGGTAGGTTATAGTGACTGGAAGAATAAAAGTGATAATATTCTTCAGTCAGAATGCTCTGCAGATGGTGAGTCTCCGCCTTTTGATTACGGAATTTTCTCACAAGCTTTGACATCTGGTATTGTTTCATCTAAGAAGTTCTTGTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATCTGAGTACACTTGGTCAGGGGCTTCAAACTAGCACCTATCCTGGCGAGGTTATATTTTCAATAGCACTAGCTATAGCTGGCCTCATCCTCTTTGCGCTCCTGATTGGCAACATGCAGACATATCTCCAGTCTCTTACCATCAGGCTTGAGGAAATGAGAGTGAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAGGAGCTTAGAGAGCGCGTGAGACGCTATGATCAATATAAGTGGTTGGCAACGCGTGGTGTAGATGAAGAAAGTCTGGTTCAGAGTCTACCAAAGGATCTGCGAAGAGATATCAAGCGGCACCTTTGTCTGGCTTTAGTGAGGAGGGTTCCTCTATTTGAGAGCATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAATACTTACCTTGTTCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATTATTCGTGGTCGCCTTGAGAGTGTCACCACAGATGGTGGAAGGAGTGGATTTTTCAACCGCAGTCTTCTGAAAGAGGCTGACTTTTGTGGAGAGGAGCTTCTAACCTGGGCACTGGATCCCAAATCTGGCTCTAATCTCCCATCTTCTACACGAACAGTTAAGGCATTGACAGAGGTTGAAGCATTTGCCTTAACTGCTGATGAGTTAAAATTTGTAGCCAGTCAATTTCGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCTAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGATCCTGATGAGTCAGAAGGAACTCACAGCAATGCAGGTGGCAGTTCTTACAGCCTTGGTGCTGCCTTGTTAGCCTCAAAATTTGCTGCACATACTCTTCGTGGTGTACATCGCAATCGAATTGCTAAGAGTGCTAGGGAGTTGGTGAAACTACAGAAACCCCCAGAGCCTGACTTTACTGCAGATGATGCAGACTAA 2208 0.4357 MLDGGYKSKYMGGQRDKLLRLEVLDSRISSSTDAGVKKAGFSIDKLSHGGHGSSKTSRSFKIGMRKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILSVSVDPLFFYLPVINDQDQVHCLGIDRKLAITVTTLRTVTDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLATKQALLFIILLQYAPRFFRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDYCWQKACRHNGFNKNFLYCGNQNMVGYSDWKNKSDNILQSECSADGESPPFDYGIFSQALTSGIVSSKKFLSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEDPDESEGTHSNAGGSSYSLGAALLASKFAAHTLRGVHRNRIAKSARELVKLQKPPEPDFTADDAD* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2140 735 Gene3D Jelly Rolls 505 625 IPR014710 -
Dod05g2140 735 Pfam Cyclic nucleotide-binding domain 528 618 IPR000595 -
Dod05g2140 735 MobiDBLite consensus disorder prediction 716 735 - -
Dod05g2140 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 14 732 - -
Dod05g2140 735 Pfam Ion transport protein 108 433 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dod05g2140 735 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 14 732 - -
Dod05g2140 735 CDD CAP_ED 507 638 IPR000595 -
Dod05g2140 735 SMART cnmp_10 507 638 IPR000595 -
Dod05g2140 735 Gene3D Helix hairpin bin 435 498 - -
Dod05g2140 735 Gene3D - 112 432 - -
Dod05g2140 735 ProSiteProfiles cAMP/cGMP binding motif profile. 507 591 IPR000595 -
Dod05g2140 735 SUPERFAMILY cAMP-binding domain-like 436 627 IPR018490 -
Dod05g2140 735 SUPERFAMILY Voltage-gated potassium channels 100 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2140 Dod-Chr5 47224223 47230968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2140 5 733 Ion Channels AT2G23980 76.075 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2140 K05391 - gmx:100784309 1269.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2140 05 47224223 47230968 Dod05g2140 05 47224223 47230968 ECH