Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2118 ATGCAGCCCTGTAGCAGGGAAATGCAAGGCCTTAACTCCCTCTTCGATAACAATAACCACACTCAGCAGCACAACCAGCAGATCCAAATGAATAATAATCATAGCCTCGACCACATGGACCCAACTTCGCAGGACGATTTCCTCAAGCACATCCTCTCCACCTTCCCTAACTCTTCTTCCTCCCCCTTCTGGGGGGATCTTAACCCTCCCTCCAACTCCGGCGAAACGACGACGCCGTCTACCGTCGACAATGTCGCCGCCTTCCCTTACGACGAACACGCTGCCCTGGCATCCAAGTTCCGTAACCACCAGATCAGCAGCGCCACGTCATCATCCACCAAGGCCGCCGCCGCTGCCGCTCTCATGCTCCAGCACCAGCTTCTCATGTCCAGAGGCGGCGCAGATTCCGGCCTCCTCCAGATGCCCTTGTCCTTGGGGGGTGCCGGACCTGCAGCTGCAGACTATGACTCCGCCCGAAACGACGTCGTTGACGGCTCATCATCCTTCAAATCTCCCAATCCCGCCGGTGAGGGTTCCGTTCATGCTATGTACAACGGGTTCGCCGGATCTCTCCAGGGAACCGCCCTAGCCTCCAACCACACCACTCACCATTTTCAACACCCACAGGGTCAGGGAGGTTCGAATCCGATGATGCAGGGGCAGAGTTTTGGAGGGTCGGGTGGCGGAGCGAACCAAGCTCCGGGAGGTGGCAACCCGGGTCAGCCGAAGCAGAGGGTTAGGGCCAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAGCGGTTACGAAGGGAAAGAATCGCGGAGAGAATGAAGGCCTTACAGGAACTAGTTCCCAATGCCAACAAGACAGATAAGGCCTCCATGCTAGATGAGATCATTGACTATGTGAAGTTCCTACAGCTCCAAGTCAAGGTTTTGAGCATGAGTAGACTGGGAGGTGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATAACGTCTGAGGTAATTATACCAGATTTTTCCATTTTCATTCCATAA 1023 0.5552 MQPCSREMQGLNSLFDNNNHTQQHNQQIQMNNNHSLDHMDPTSQDDFLKHILSTFPNSSSSPFWGDLNPPSNSGETTTPSTVDNVAAFPYDEHAALASKFRNHQISSATSSSTKAAAAAALMLQHQLLMSRGGADSGLLQMPLSLGGAGPAAADYDSARNDVVDGSSSFKSPNPAGEGSVHAMYNGFAGSLQGTALASNHTTHHFQHPQGQGGSNPMMQGQSFGGSGGGANQAPGGGNPGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADITSEVIIPDFSIFIP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2118 340 Gene3D - 247 309 IPR036638 GO:0046983
Dod05g2118 340 SMART finulus 258 307 IPR011598 GO:0046983
Dod05g2118 340 MobiDBLite consensus disorder prediction 201 228 - -
Dod05g2118 340 MobiDBLite consensus disorder prediction 1 26 - -
Dod05g2118 340 MobiDBLite consensus disorder prediction 59 78 - -
Dod05g2118 340 Pfam Helix-loop-helix DNA-binding domain 257 302 IPR011598 GO:0046983
Dod05g2118 340 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 328 - -
Dod05g2118 340 PANTHER TRANSCRIPTION FACTOR BHLH69 35 328 - -
Dod05g2118 340 MobiDBLite consensus disorder prediction 201 258 - -
Dod05g2118 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Dod05g2118 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 312 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2118 Dod-Chr5 47019710 47023783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2118 182 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 61.379 3.35e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g2118 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2118 - - jre:109012891 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2118 05 47019710 47023783 Dod05g2118 05 47019710 47023783 ECH