Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2104 ATGATTGTGAAGAATCAAAAGGGTGAACATGGGGCCAAGGACTGTTTTCCAGACCTCTTCCCAGTTGGTATGCGTGTTCTTGCTGTTGATGACGATCAAATTTGTCTCAAAGTGTTGGAGAAGATGCTTATGCAATGCCGCTATCATGTTACTACTACTACTCAGTCAATCAAGGCGCTCGAGATGTTGAGGGAAAACAAAAATAAGTTTGACCTTGTTATTAGTGATGTGAACATGCCAGACATGGATGGATTTAAGCTGCTTGAGATAGTTGGACTTGAAATGGACCTACCTGTTATCATGTTGTCAGCACACAAAGATACAAATCTGGTGAAGAAAGGTGTTTTGCATGGGGCATGTGACTATTTGCTGAAACCTTGTCGAATGGAGGAACTGCAGAACATATGGCAACATGTATTCCGAAGGCAGATTGATTTCAAGGAACTGAACAAGGCCTCCACTGAGGAGAAGGCCTGCAATATGGCCAGTGAGGGTAGTCAAGGATTTGCTTCGGAAAATAATGCTGATGAGAACAAGAAACCGGGTAAAAGAGATAAGGAAGAAGATGAGGAAGAGGGGGAAGAAGATGATGACGAGAATGAACAAGAGGATGAGGAACGCTGGACTCGGAAGAAGCCTCGTTTGCTTTGGGTTGTTGAATTGCATAGCAAATTTGTTGCTGCAGTTAATCAGCTTGGCCTTGAGAAGGCTGTTCCTAAGAAAATACTAGAGCTGATGAATGTAGAAGGGCTCACAAGGGAAAACGTGGCAAGCCATCTTCAGAAATACAGACTGGGCCTAAGAAAGGCAGCTCAACAAGCTAGCACGGTTGCTGCAATGGGTGGTAGTGATCCTTACCTGCAGCTGGCTTCACTAGATCCTTATGCATCCTGTTCACGAAGATTCTCAAGCACCACATTACCATCTTATGCATCTGGTGGAATTTTTTCTAAGCTGAACTCCCCACCTAGCTTCAACTTGAGAGGAATGAGTTCTTCTGGGCTGGTACCGCCTGATCAGTCGCAAAACATGAACGGCCCCATAAAAGCACTCAGAAGCATCCAGCCATCCATCTTTTCTGCAAATCAAAGCACAGATTTATCACAGGGAATTCCAACGTCAATTGAAGTCAACCAGTTCCAGCAGAGCAACTATAGAGCTGGTATTAGGCAGTTAAGACCAACTGATTATGCGAGTGTATTCACAGTTCCCTCTGTCTACACAAAGAGTAGAGCTACAGTTGGTAATGGAAATAATAATCTATCTTGCTTCTCAAGTAATCATTTGCCATTACAAGGAAACTCCACACTAACACATAATTCAGTAGCATTTAGAAATCACTCTCCTCTTGGAGCTGCTTCTGTGAGCACTGACCCTTCTGACACTGGCATCTGTGGTGCATCTCACAAAAGCGTGCAGACTGCGGCTCAGTTAGCCAAATTTCCTGCCAATTCTTTGCCACTGAGTCAAGCTTTCAATAATGGTCAATTGCCTCTAAACAGCTTTAAGTTTTCCTCCTCCGCTTCTCATATTGGGAACATTCCTTTTGATTTTTCTTCCAGAAGTGCTGTTGTTCCTTTTGATGAATCTAGAGGCGGGCTTCAATGCCAAGAAGGCTTGATTGGGAGTCTCGTACAGGCTTCATATTCCACCCCTCAGCAAAGTTGGCAACAACATAAGCAGGATTACAACGAAAACAATAACCAAACCTTAAATTCGCTGGTTTCTCCTAATGGACACACTAATTCCTTGGGGCGTACTTCAAACCAAAATAACACCAATGGCATAAAGAGAGTTGATGCATCTTTGGCTGGCCAAGTGAATAAAGCTACTCCACCAACCAACCAGTGCCCTGAACCTGAAAAATTATGTTCACATCCGGGAATGAAGCCAAATGATGCCTGCCTTTTGCAGCAAGTGGAGTCCCAAGAAGTAGTCATTGAGAGTGACTTTGAGTCCTTGGACGACATATTGGGCGACATATTCAAACCGGAGCACCATAGGATTCTATTCATGAATGATGAATTGGTATTTGATGCTGACCCTGTCGGATCATGTGGCTGA 2064 0.4385 MIVKNQKGEHGAKDCFPDLFPVGMRVLAVDDDQICLKVLEKMLMQCRYHVTTTTQSIKALEMLRENKNKFDLVISDVNMPDMDGFKLLEIVGLEMDLPVIMLSAHKDTNLVKKGVLHGACDYLLKPCRMEELQNIWQHVFRRQIDFKELNKASTEEKACNMASEGSQGFASENNADENKKPGKRDKEEDEEEGEEDDDENEQEDEERWTRKKPRLLWVVELHSKFVAAVNQLGLEKAVPKKILELMNVEGLTRENVASHLQKYRLGLRKAAQQASTVAAMGGSDPYLQLASLDPYASCSRRFSSTTLPSYASGGIFSKLNSPPSFNLRGMSSSGLVPPDQSQNMNGPIKALRSIQPSIFSANQSTDLSQGIPTSIEVNQFQQSNYRAGIRQLRPTDYASVFTVPSVYTKSRATVGNGNNNLSCFSSNHLPLQGNSTLTHNSVAFRNHSPLGAASVSTDPSDTGICGASHKSVQTAAQLAKFPANSLPLSQAFNNGQLPLNSFKFSSSASHIGNIPFDFSSRSAVVPFDESRGGLQCQEGLIGSLVQASYSTPQQSWQQHKQDYNENNNQTLNSLVSPNGHTNSLGRTSNQNNTNGIKRVDASLAGQVNKATPPTNQCPEPEKLCSHPGMKPNDACLLQQVESQEVVIESDFESLDDILGDIFKPEHHRILFMNDELVFDADPVGSCG* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2104 687 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Dod05g2104 687 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 665 IPR045279 GO:0009736
Dod05g2104 687 Coils Coil 186 206 - -
Dod05g2104 687 Gene3D - 23 160 - -
Dod05g2104 687 MobiDBLite consensus disorder prediction 188 203 - -
Dod05g2104 687 MobiDBLite consensus disorder prediction 157 174 - -
Dod05g2104 687 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Dod05g2104 687 PIRSF RR_ARR_type-B 2 686 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dod05g2104 687 Gene3D - 209 270 - -
Dod05g2104 687 SUPERFAMILY CheY-like 23 149 IPR011006 -
Dod05g2104 687 Pfam Myb-like DNA-binding domain 217 264 IPR001005 -
Dod05g2104 687 MobiDBLite consensus disorder prediction 157 207 - -
Dod05g2104 687 CDD REC_typeB_ARR-like 26 140 - -
Dod05g2104 687 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 665 - -
Dod05g2104 687 SMART REC_2 24 136 IPR001789 GO:0000160
Dod05g2104 687 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Dod05g2104 687 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2104 Dod-Chr5 46913206 46917271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2104 18 421 Response Regulator Gene Family AT2G25180 46.860 4.72e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dod05g2104 Response_reg 3.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2104 K14491 - gmx:100776075 739.569