Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2088 ATGTCAGGGTGGGACGAAGGAGCAGTCTACTACAGTGACCAAGCCCACTCCTGGGACGACGGCGCCGCAGGCCGTCCCGGCGACCCTTCCTCCGCCTCCGCCGCTGCGTCCAACCACTCCGTCCTCCAGAAGTTCAAGGAGTTCATCCGAAACTACGCCAAATCCGAGTCCAAAAACGTCTTCCCTTACAGAGAGAGCCTCCTTCACAACCCTAAGTTCCTCCTCGTCGACATCGCAGACCTCGAAGAGTTCGACCCCGACCTTTCCTCCAAGCTCCACTCTTCCCCCGCCGATTTCTTGCCCCTCTTTGAGACCGCGGCGGCGCAGGTTTTGGTGAGTTTGAAGACGAAAGTGCCTGGTGATACCGGAGCTATGGAAGATCCTGTGACCGGTGATGTTCAGGTTCTGCTTACTTCGAAGGTGGATCCGGTATCGATGAGATCGCTCGGGGCTCAACACATATCGAAGCTTGTTAAGATTGCTGGGATTACCATTGCCGCGTCGAGGACTAAGGCGAAGGCAACTTATGTTAACCTAATTTGTAAGAATTGCAAGAAAGGGAAGATAGTTCCTTGTAGGCCAGGACTTGGGGGTGCAATTGTTCCTCGTTCGTGTGATCATGTTCCTCAGCCTGGAGAAGAACCGTGCCCAATTGATCCATGGCTTGTGGTTCCTGACAAGAGCAAGTACGTTGATCAACAAACCTTGAAACTGCAAGAAAACCCGGAGGATGTTCCAACAGGAGAGCTTCCTAGAAACCTGCTTCTCTCTGTTGATCGTCATCTAGTTCAAACGGTTGTACCTGGCTCAAGATTGGCAATCATTGGAATCTACAGTATTTACCAAGCTTCCAACTCTTCTACATCTCACAAAGGAGCAGTTGCAGTCAGACAGCCTTACATTAGGGTTGTAGGAATAGAAGAAGCAAATGAGGCCAAGTCACGAGGTCCGGCTGCATTTACACCAGAAGAGATAGAAGAGTTCAAAAAGTTTGCTGCTGAACCTGATGCATATAGAAATATATGCTCCAAGATTGCTCCGTCAATATATGGGCATGATGATGTCAAGAAGGCTGTGGCCTGTCTTCTTTTTGGTGGGTCAAGAAAGAATTTGCCAGATGGAGTGAAGTTAAGAGGCGATATCAATGTCTTGCTTCTTGGGGATCCATCTACAGCAAAATCACAGTTCCTCAAGTTTGTTGAAAAGACAGCACCTGTTGCAGTTTATACTTCTGGTAAGGGCTCATCAGCTGCCGGTCTCACAGCTTCTGTAATCAGAGATAGCAGCACTCGTGAATTTTATCTTGAAGGAGGGGCCATGGTCTTGGCAGATGGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAGACCGGAAGATAGGGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACAGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCTGCTAACCCTCCCTCAGGACGTTATGATGATCTTAAGACTGCACAAGATAACATTGATTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATCTTTATTGTGAAAGATATCAGAAAGTACGATCAAGACAAGATCATTGCCAGTCACATCATAAGGGTTCATGCATCAGTTGGTGCAACCCCTGGTGAGAACAGGGTTTCTAACGAAGAGAATTGGCTGAAGAGGTATTTGCAATATTGTCGAACTGAATGCCACCCTCGTCTATCGGAATCTGCAGCAACACATCTGCAGAATGCTTATGTGAAAATCAGACAGGACATGAGGCAGCAAGCCAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGGCACTTGCAAAGATGAAACTATCTTATCTTGCTACTGAGGAGCATGTGCAAGAAGCAATAAGGCTTTTCACTGTGTCTACAATGGATGCAGCTAGGTCTGGAATAAACCAACAAATAAATCCCACAGCTGAAATGGCAAATGAAATAAAGCAAGCAGAAACTCAGATAAAGAGAAGAATTGGAATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGAATGAATGAATCCATTGTGAGAACAGCTCTTGTAATCATGCACCGGAGAGACGAAGTGGAGTACAAGCGAGAAAGGCGTGTTATATATAGGAAGGCATAA 2220 0.4622 MSGWDEGAVYYSDQAHSWDDGAAGRPGDPSSASAAASNHSVLQKFKEFIRNYAKSESKNVFPYRESLLHNPKFLLVDIADLEEFDPDLSSKLHSSPADFLPLFETAAAQVLVSLKTKVPGDTGAMEDPVTGDVQVLLTSKVDPVSMRSLGAQHISKLVKIAGITIAASRTKAKATYVNLICKNCKKGKIVPCRPGLGGAIVPRSCDHVPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLAIIGIYSIYQASNSSTSHKGAVAVRQPYIRVVGIEEANEAKSRGPAAFTPEEIEEFKKFAAEPDAYRNICSKIAPSIYGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRKYDQDKIIASHIIRVHASVGATPGENRVSNEENWLKRYLQYCRTECHPRLSESAATHLQNAYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSYLATEEHVQEAIRLFTVSTMDAARSGINQQINPTAEMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIVRTALVIMHRRDEVEYKRERRVIYRKA* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2088 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 655 IPR027417 -
Dod05g2088 739 Gene3D - 173 231 - -
Dod05g2088 739 Gene3D - 37 123 - -
Dod05g2088 739 ProSitePatterns MCM family signature. 446 454 IPR018525 GO:0003677|GO:0005524|GO:0006260
Dod05g2088 739 Gene3D - 318 675 IPR027417 -
Dod05g2088 739 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 67 685 - -
Dod05g2088 739 Gene3D - 146 281 IPR012340 -
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 147 162 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 649 666 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 173 185 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 573 588 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 297 309 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Dod05g2088 739 CDD MCM5 340 654 - -
Dod05g2088 739 Pfam MCM P-loop domain 325 547 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein family signature 378 393 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein family signature 438 452 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod05g2088 739 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod05g2088 739 SUPERFAMILY Nucleic acid-binding proteins 44 303 IPR012340 -
Dod05g2088 739 Pfam MCM OB domain 146 281 IPR033762 -
Dod05g2088 739 Pfam MCM N-terminal domain 43 120 IPR027925 -
Dod05g2088 739 ProSiteProfiles MCM family domain profile. 337 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod05g2088 739 Pfam MCM AAA-lid domain 565 654 IPR041562 -
Dod05g2088 739 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 67 685 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dod05g2088 739 SMART mcm 142 656 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2088 Dod-Chr5 46797355 46803475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2088 1 739 Core DNA Replication Machinery Family AT2G07690 76.892 0.0 1169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2088 K02209 - jre:109019482 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2088 05 46797355 46803475 Dod05g2088 05 46797355 46803475 ECH