Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2087 ATGCCGGACGGAGAATCCTCTTCCGGCTGTCCGTCGCCGCCTTTAAGTCTCTCTGAAGTCAAGGATCAACTTGACGACTCCGTTGAGAAAGACCCCAGAAAAATTGCCAGACAGTATCAGTTGGAGCTGTGCGAAAAAGCGTTGGAGGAAAACATAGTTGTATATTTGGGGACTGGTTGTGGGAAGACCCACATTGCTGTGCTGCTTATGTATGAAATGCGTCATTTAATACGGAAGCCCCAGAAAAACGTGTGTGTCTTTCTTGCCCCTACTGTGGCGCTTGTTCATCAGCAAGCAAAGGTTATAGAAGACTCTACTGATTTTAGGGTTGGGATTTACTGCGGGAGCTCCAAGCGCTTGAAACGTCATCATGATTGGGAGCTGGAGATTGCACAATATGAGGTTCTTGTTATGACCCCACAGATATTATTGCACAACTTATCTCATTGTTTCATCAAGATGGAGATGATTTCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATCCTTATGCAGAAATCATGAAAATCTTCTACAAAAATAATTGCACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCAGTTGTTGGAAAAGGGGCTTCTAGTGAAGGAAATCTACCAAAAAGCATCAATAGTCTTGAACAAATGCTTGATGCTAAGGTATACTCAGTTGAAGACAAGGAATTGCAATCTTTTGTGACCTCTCCTAAGATTTCTATTCATGATTATAGCTCAACTGCAAATGGGGGAACTAGTTTGTACATGACTTCCTTTGCCAGACTTAACGAGGTCAAACATCAGTGCATATCAATGCTTGGTAAGAATATAGAAGCTCACCAGAAACGGATGAACACAAGGAAACTTCTAAACCGGATGCATGAAAATGTGGTTTTCTGTCTGGAGAATCTTGGTATTTGGGGAGCACTGCAAGCTAGTCGTATTCTTTTGAGTGGTGATCATTCTGAGAGGCGTGAATTACTGGAGGCCGAAGGAAATTCAAGTGATGACTGTGTGTGTGATAAATATCTAACTCAGGCTGCTGAACTCTTTACTTCACAATGTCTGATAGGTGACAGTGTATCTGATTTGTCTTCTACGGAAATATTGAAAGAGCCCTTTTTCTCATCAAAGCTTTTGTGCCTCATTCAGATACTGTCCTCCTTTAGGTCGCAACAGAACAGGAAATGTATAATTTTTGTTAATAGAATCGTGACTGCAAGATCCCTGTCATACATTCTTAGGCAGCTGAAGCTTCTGGCACAATGGAAAAGTGATTTTCTAGTAGGAGTCCATGCTAGACTGAAGAGTATGTCAAGAAAGACCATGAACATCATTGTTGAGAAGTTTCGCTCTGGTGAGTTGAATCTATTGGTTGCAACTAAAGTTGGTGAAGAAGGACTTGACATTCAGACTTGCTGCCTTGTCATACGGTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAATCAAGAGGTCGTGCACGTATGCCTCAGTCGGAATATGTCTTTTTAGTGGACAGTGGCAATAAGAAGGATCTAGACTTAATTGATGATTTTAAGAAAGATGAACACCGAATGAATATGGAAATTCGTTACCGGACATCCAATGAGACATACATCACCCCCGAGGAAAGAATGTTTAAAGTTGATTCATCTGGTGCTTCTGTCAGTTCGGGATATAGTATCTCTTTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAGCCAAATTTTTTTTACTTTGATGATCAAGGGGGAAATGTCTGCCACATAATATTTCCTTCCAATGCTCCAATACACCGAATTGTCAGTACACCACAGTTGTCTATGGAAGCTGCCAAGAAAGATGCTTGCCTAACAGCAATTGAAGAACTGCATAAATTAGGTGCTTTAAGTGATTGTCTCTTGCCAACGCAAGATGATGCAGAGCCAGAGGAGAAGGATTCGAACTCTTCTGATTCAGATGGGTGTGAAGATGACAATTCAAGAGGAGAATTACATCAGATGCTAGTTCCTTCTGCCTTTGAACAGTCTTGGGTAAATGAGGAGAAAATTGTCTGTCTCAACTCCTACTATATAAAATTTTGTCCCTGTCCAGCAGATAGGGTTTACAAAGAGTTTGGTCTATTCATCATGACACGTCTTCCAATGGAGGCTGAAAAACTGGAGCTTGATCTTCATCTTGCTCATGGTAGATCTGTGATGACAACATTTGTTCCGTTTGGAGTTGTAGAATTTGACAAAGATAAGATTAAGATGGCAGAAAACTTTCAAGAGATGTTCCTGAAAGTTATTCTTGATCGATCAGACTTTGTTTCCAAGTTTGTACCCCTGGGTAAGGGTGCTGAATATCACACCAGCACATCAACCTTCTACCTGTTGCTTCCGGTCGTATTGCAAGAACACAAAAATGTCATGACTGTAGATTGGAAGACAGTGTCGAGATGCCTTTGTTCACCAATTTTTAAGCATTCAGTGGATACTGGGGATAGAAAATTTTACCCTTCAGATATTCCCCTGCAACTTGCCAATGGTTCCAGCAGTGTCAGAGATGTTGAAAATAGTTTAGTATATGCCCCACATAAAAAGCTCTTTTATTTTATCACAAAAGTTATTTACGAAAAGAATGGATACAGTACCTGTAAAGAATCAGGCAGTTCAAGCTATGCGGACGACTTCATCGAAAAGTTTTCCATTCATCTCAAACACCCTGAGCAACCACTTCTGCATGCAAAACCAGTCTTCATTTTGCACAACCTGCTGCACAATCGAAAGAATGAGGATACAGAACCACATGAGCAGGAGGAATTCTTCATTGATTTGCCCCCTGAGCTTTGTGAACTGAAAGTAGTAGCTTTTTCAAAGGATATGGGTAGTTCCATATCTTTGCTACCCTCAATTATGCATCGACTTGGAAACTTGCTGGTTGCTATTGAACTCAAGCAAACGCTGTCTTCTTTCTTCCCAGAGGCAGCTGAAATTAATGCCCATACATTTCTAGAGGCTCTCACCACTGAGAAGTGCCAGGAGCGTTTTTCCCTTGAAAGGCTAGAAGTGCTTGGAGATGCTTTTCTCAAATATGCGGTTGCACGCCATTTTTTCCTCATGCATGACAGCCTTCATGAAGGAGACCTTACCAGAAGGCGTTCCAATGTTGTGAATAATTCCAATTTGTATAAGTTGGCTATTAGACAAAATTTGCAGGTCTATATACGTGATCAGGCATTTGATCCCTCCCAGTTCTATGCATTAGGCCGTCCTTGCCCAAGAGTTTGTAACAGTGAAATGGAAGAAAGCATACACTTGTGTTTAAATTCTGTTAAGGAGCAAGGAAAATCAACTGAAATCCAGTGCAACAAAAATCACCACTGGTTACATAGGAAGACAGTTGCTGATGTGGTTGAAGCTCTGGTCGGAGCATTCATAGTTGACAGTGGCTTTAAAGCTGCAATTGCATTTCTTAAATGGATTGGCATACGAGTCGATTTTGAAGCCTCGCAAGTGGTTAATGTTTGCACAGGAAGTGCTGGATATATCTCTCTCTCTGATGATGTAGACATTCCTTCCCTGGAAGATAAGTTAGGATATAACTTTGTTCATAAGGGTCTGCTTCTTCAGGCATTTGTACATCCTTCTTACAATAAGCTTGGGGGAGGTTGCTACCAGCGCCTGGAGTTTCTTGGAGATGCTGTGTTGGATTATTTGATTACTTCATACCTATACTCAGCTTATCCCAAGCTAAAGCCTGGTCAATTGACAGATTTGAGGTCATTGTCTGTTAACAACAAGGCATTTGCCTGTGTTGCGGTAGATCGCAGTTTTGATAAATTTCTTTTACGCGATTCTAGCAGCCTTTCTGAGGCAATAAAAAAGTACGTGGACTATATTCGAAGACCCATATCACATAGTGGTGCTAATGAAGGGCCGAAATGTCCGAAGGCCCTGGGTGACATAGTGGAATCTTGTGTTGGTGCTATTCTTCTTGATTCAGGGTTCAATCTGAACAAAGTTTGGGAGATAATGACTTCATTCTTAGACCCAATCATGAAATTCTCATCAAGCTTACAGCTTAGCCCCATTAGGGATTTGCAAGAACTTTGTCAATCTCATAATTTGGACTTGCAGATTCAGCCAACAAAACTGACTAAAGTGTTTGAAGTGAAAGTGACTGCGAATGCTTTACGTAAAACAGCTTCAGCAACCAGCCAAAATAAAAAAGAGGCTTTAAGAATTGCTTCACAGAGACTATTTTCAGACTTAAAGGCTCAAGGCTGGAAACCAAAGTCAAAACCTTTGGAAGAAGTTCTGAAATCAACCTTTAAGGGGGAAGCAATACTTATTGGCTATAATGAAATTCCCGTCGATGTAACAGCTGCTAACTCCGTGGGGCCTGTAATGGTTAATGGGGACTTAAGTAGCAAGTCTAAACTGATAATTCGCCCCATTCGTGAGGTGCTTGATATAAAACCTATTGGCCAACAACTTCAATCTTCTCCCAAGGGACGGCTTAGTGGAACTACTGAAAATCACGATTGTGACATTGACTCATCGAGGACAGATTGTGCATTCAAAGGAACAGCAAGATCACGACTGTATGAATTCTGTGCTGCTTATTGCTGGAAACCTCCTTCATTTGAGTGCTGCAAAGAACAGGGACCAGATCACCTAAAGTTATTCACTTACAAGGTGACCTTGGAGATGGAAGAAACCCCTGATACGACATTTGAGTTTATTGGGGATCCTCAATCAAAAAAGAAAGATGCAGCAGAGCGTGCAGCTGAGGGTGCATTTTGGTTCCTACAACAGGAAGGCTACCTGCCTAAACCTAACGGTAGCTAA 4878 0.4135 MPDGESSSGCPSPPLSLSEVKDQLDDSVEKDPRKIARQYQLELCEKALEENIVVYLGTGCGKTHIAVLLMYEMRHLIRKPQKNVCVFLAPTVALVHQQAKVIEDSTDFRVGIYCGSSKRLKRHHDWELEIAQYEVLVMTPQILLHNLSHCFIKMEMISLLIFDECHHAQVKSNHPYAEIMKIFYKNNCTKVPRIFGMTASPVVGKGASSEGNLPKSINSLEQMLDAKVYSVEDKELQSFVTSPKISIHDYSSTANGGTSLYMTSFARLNEVKHQCISMLGKNIEAHQKRMNTRKLLNRMHENVVFCLENLGIWGALQASRILLSGDHSERRELLEAEGNSSDDCVCDKYLTQAAELFTSQCLIGDSVSDLSSTEILKEPFFSSKLLCLIQILSSFRSQQNRKCIIFVNRIVTARSLSYILRQLKLLAQWKSDFLVGVHARLKSMSRKTMNIIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYVFLVDSGNKKDLDLIDDFKKDEHRMNMEIRYRTSNETYITPEERMFKVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFFYFDDQGGNVCHIIFPSNAPIHRIVSTPQLSMEAAKKDACLTAIEELHKLGALSDCLLPTQDDAEPEEKDSNSSDSDGCEDDNSRGELHQMLVPSAFEQSWVNEEKIVCLNSYYIKFCPCPADRVYKEFGLFIMTRLPMEAEKLELDLHLAHGRSVMTTFVPFGVVEFDKDKIKMAENFQEMFLKVILDRSDFVSKFVPLGKGAEYHTSTSTFYLLLPVVLQEHKNVMTVDWKTVSRCLCSPIFKHSVDTGDRKFYPSDIPLQLANGSSSVRDVENSLVYAPHKKLFYFITKVIYEKNGYSTCKESGSSSYADDFIEKFSIHLKHPEQPLLHAKPVFILHNLLHNRKNEDTEPHEQEEFFIDLPPELCELKVVAFSKDMGSSISLLPSIMHRLGNLLVAIELKQTLSSFFPEAAEINAHTFLEALTTEKCQERFSLERLEVLGDAFLKYAVARHFFLMHDSLHEGDLTRRRSNVVNNSNLYKLAIRQNLQVYIRDQAFDPSQFYALGRPCPRVCNSEMEESIHLCLNSVKEQGKSTEIQCNKNHHWLHRKTVADVVEALVGAFIVDSGFKAAIAFLKWIGIRVDFEASQVVNVCTGSAGYISLSDDVDIPSLEDKLGYNFVHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLRDSSSLSEAIKKYVDYIRRPISHSGANEGPKCPKALGDIVESCVGAILLDSGFNLNKVWEIMTSFLDPIMKFSSSLQLSPIRDLQELCQSHNLDLQIQPTKLTKVFEVKVTANALRKTASATSQNKKEALRIASQRLFSDLKAQGWKPKSKPLEEVLKSTFKGEAILIGYNEIPVDVTAANSVGPVMVNGDLSSKSKLIIRPIREVLDIKPIGQQLQSSPKGRLSGTTENHDCDIDSSRTDCAFKGTARSRLYEFCAAYCWKPPSFECCKEQGPDHLKLFTYKVTLEMEETPDTTFEFIGDPQSKKKDAAERAAEGAFWFLQQEGYLPKPNGS* 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2087 1625 CDD DEXHc_dicer 34 233 - -
Dod05g2087 1625 MobiDBLite consensus disorder prediction 653 675 - -
Dod05g2087 1625 CDD RIBOc 1012 1177 IPR000999 GO:0004525|GO:0006396
Dod05g2087 1625 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1539 1615 IPR014720 -
Dod05g2087 1625 Pfam DEAD/DEAH box helicase 38 199 IPR011545 GO:0003676|GO:0005524
Dod05g2087 1625 SUPERFAMILY dsRNA-binding domain-like 1540 1622 - -
Dod05g2087 1625 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 568 658 IPR005034 GO:0016891
Dod05g2087 1625 PANTHER DICER-LIKE PROTEIN 4 32 1617 - -
Dod05g2087 1625 SMART riboneu5 1010 1179 IPR000999 GO:0004525|GO:0006396
Dod05g2087 1625 SMART riboneu5 1215 1367 IPR000999 GO:0004525|GO:0006396
Dod05g2087 1625 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1540 1613 - -
Dod05g2087 1625 ProSiteProfiles Ribonuclease III family domain profile. 1200 1344 IPR000999 GO:0004525|GO:0006396
Dod05g2087 1625 Pfam Ribonuclease III domain 1028 1159 IPR000999 GO:0004525|GO:0006396
Dod05g2087 1625 Pfam Ribonuclease III domain 1235 1344 IPR000999 GO:0004525|GO:0006396
Dod05g2087 1625 SMART DRBM_3 1540 1614 IPR014720 -
Dod05g2087 1625 SMART DRBM_3 1372 1434 IPR014720 -
Dod05g2087 1625 MobiDBLite consensus disorder prediction 1 23 - -
Dod05g2087 1625 Gene3D paz domain 856 961 - -
Dod05g2087 1625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 219 IPR014001 -
Dod05g2087 1625 SMART ultradead3 32 234 IPR014001 -
Dod05g2087 1625 Gene3D Ribonuclease III domain 1005 1170 IPR036389 GO:0004525|GO:0006396
Dod05g2087 1625 Gene3D - 1369 1442 - -
Dod05g2087 1625 Gene3D - 34 264 IPR027417 -
Dod05g2087 1625 MobiDBLite consensus disorder prediction 652 675 - -
Dod05g2087 1625 SUPERFAMILY RNase III domain-like 1199 1363 IPR036389 GO:0004525|GO:0006396
Dod05g2087 1625 SUPERFAMILY RNase III domain-like 1008 1172 IPR036389 GO:0004525|GO:0006396
Dod05g2087 1625 ProSitePatterns Ribonuclease III family signature. 1235 1243 IPR000999 GO:0004525|GO:0006396
Dod05g2087 1625 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1371 1435 IPR014720 -
Dod05g2087 1625 SUPERFAMILY dsRNA-binding domain-like 1326 1433 - -
Dod05g2087 1625 Pfam Dicer dimerisation domain 568 653 - -
Dod05g2087 1625 ProSiteProfiles PAZ domain profile. 863 963 IPR003100 GO:0005515
Dod05g2087 1625 CDD RIBOc 1216 1366 IPR000999 GO:0004525|GO:0006396
Dod05g2087 1625 SMART PAZ_2_a_3 829 989 IPR003100 GO:0005515
Dod05g2087 1625 ProSiteProfiles Ribonuclease III family domain profile. 990 1159 IPR000999 GO:0004525|GO:0006396
Dod05g2087 1625 PANTHER DICER-RELATED 32 1617 - -
Dod05g2087 1625 Gene3D Ribonuclease III domain 1198 1368 IPR036389 GO:0004525|GO:0006396
Dod05g2087 1625 Gene3D Dicer dimerisation domain 564 660 IPR038248 -
Dod05g2087 1625 Pfam PAZ domain 863 984 IPR003100 GO:0005515
Dod05g2087 1625 Gene3D - 377 539 IPR027417 -
Dod05g2087 1625 SMART helicmild6 414 504 IPR001650 -
Dod05g2087 1625 Gene3D - 1546 1615 - -
Dod05g2087 1625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 541 IPR001650 -
Dod05g2087 1625 Pfam Helicase conserved C-terminal domain 384 502 IPR001650 -
Dod05g2087 1625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 518 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2087 Dod-Chr5 46765370 46792826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2087 402 501 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 4.92e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2087 K11592 - gmx:100818702 2515.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2087 05 46765370 46792826 Dod05g2087 05 46765370 46792826 ECH