Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2077 ATGGCTTTTCACGAGCATATCCAACACGAGATAGCTTTCCAGCGTTTCAATGAGGAGCAACAGCTGACAGATAGTACTAGGGACATGCAGCAGAGAGTGCCCCCGACATGGCTCAACAACAACGTTAACGCCGTCGCCGCAACAGCTACTACTCACCACCAGCACCTTCGGCAGCAGAATTTCCTGCACCAGCTGCAACCGGACACCACCGACAAGACCATGGATCGGAATGGTAATATCGAATCCGATGATTTGAGGGAGTACAAGGCTGATATTTTGGGGCACCCCCTTTACGAGCAGCTCTTGTCGGCACATGTTTCGTGCCTCAGGATTGCCACGCCGGTTGACCAGCTTCCTAGGATCGATGCTCAGTTGCAGCAGTCGCAGCGCGTGGTGGACAAGTACTCTGGACTTGGGAATAATGGTGTGGTGGATGAGAAGGAGCTTGATCACTTCATGACGAATTATGTCCTGCTGCTGTGTGCCTTCAAAGAACAGTTGCAACAACATGTCCGTGTTCATGCAATGGAAGCAGTGATGGCTTGTTGGGATCTCGAGCAGTCTCTACAAAGCTTGACCGCAGGTGTGTCTCCTGGTGAAGGAACGGGTGCAACAATGTCTGACGATGAAGATGACCAAGCGGAGAGCAACGCCAACTTATACGAAGGAAGCCTGGATGGTGTTGATACTCTTGGTTTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAGCGAGTGAGGCACGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATCCTACGAAAGAGACGAGCGGGGAAGCTCCCAGGGGACACCACGTCCCTTTTGAAAGCATGGTGGCAATCACATGCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTGAAGCAGATAAATAACTGGTTTATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGGTAG 1050 0.5 MAFHEHIQHEIAFQRFNEEQQLTDSTRDMQQRVPPTWLNNNVNAVAATATTHHQHLRQQNFLHQLQPDTTDKTMDRNGNIESDDLREYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNNGVVDEKELDHFMTNYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTAGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGVDTLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKSKRKR* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2077 349 Pfam KNOX2 domain 144 193 IPR005541 GO:0003677|GO:0005634
Dod05g2077 349 Pfam ELK domain 252 273 IPR005539 GO:0003677
Dod05g2077 349 SMART ELK_2 252 273 IPR005539 GO:0003677
Dod05g2077 349 ProSiteProfiles ELK domain profile. 252 272 IPR005539 GO:0003677
Dod05g2077 349 MobiDBLite consensus disorder prediction 329 349 - -
Dod05g2077 349 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
Dod05g2077 349 SMART KNOX2_2 139 194 IPR005541 GO:0003677|GO:0005634
Dod05g2077 349 SMART HOX_1 274 339 IPR001356 GO:0003677
Dod05g2077 349 Gene3D - 273 334 - -
Dod05g2077 349 SMART KNOX1_2 86 130 IPR005540 GO:0003677|GO:0005634
Dod05g2077 349 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 23 348 - -
Dod05g2077 349 CDD homeodomain 275 336 IPR001356 GO:0003677
Dod05g2077 349 Pfam KNOX1 domain 88 129 IPR005540 GO:0003677|GO:0005634
Dod05g2077 349 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Dod05g2077 349 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 23 348 - -
Dod05g2077 349 SUPERFAMILY Homeodomain-like 274 339 IPR009057 -
Dod05g2077 349 MobiDBLite consensus disorder prediction 194 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2077 Dod-Chr5 46671098 46677767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2077 88 349 Homeobox Transcription Factor Family AT5G25220 83.774 3.72e-162 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod05g2077 KNOX2 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2077 - - gmx:100781997 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2077 05 46671098 46677767 Dod05g2077 05 46671098 46677767 ECH
Dod05g2077 05 46671098 46677767 Dod03g1760 03 26146178 26154166 PCT