Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2068 ATGGGTTCGGTCAACAGTAGACTGGGGTCTCGCCCTCCCAGTTCCAGGGTCAACCGTAACACACGCTTCAGACTCTCCTCTCTTCTCTGCGGCGCTTCCACCTCTCGCTCTACCCATCAGTTGGACGAACATCCATCTCAACTTCAGGTAGATTCGGCAACAGAAATTGATAAAGGAATGCACAAAGTAACTGAGGAATCGTCTTTATCCTGTACAGAAGCTATTATTGAAGCGACAACCTCATCTGATACTAGAACTGAGTCCTATGGCAATACTACTGTCGAAGGCTCTTCCATAAATCTTGCAACAAGTAGTCAGAGAACATGCTTGTCTGAATGTAAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGTCATAGTCGTCATGAATCATATAGGAATAGTAGCAGCACAGCTAGTACTTTATATGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGGAGTCAATGATTTTGATGATCCAGTGGTTAGTGGGGTATCTCAAATCTCTCGTGAGACGGTGCACCCAAGGAGTTCGGGCCCTCAGGAGCATGGAACTTCTAGTTCTAGTGAAATTTCTGTTGAGAATCACACTGATGCATTCATGGCTATCCCAAATCCTTCTTCCAATCCTGTTCCTCAAGTTTCCAATTTACCAGCAACTTCCCAGTTTCCGGAAGACGAATCTCAGAGAGAGACAATACCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGTGCAGGGGAATGATAGTGTGCTTCAAGTTGATGTGGTCACAATATCCTCCAACATTTTGTCTGGCAGCAATGTTGAAGCCAATGATCACTATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCCTTTTCACGACGTAGTTCTAGAAGGCTTGGCGACTCACAAACCATTGTCTTCTCTGCTGGTGGTGCTGATGACCCAGGATCTCAAGATCAATGGCTTGTTGATTTTAGTGGTGATTTCTCAAATGACGGGGTTGGAGGTGCTTCTTCTGGATATATGGGCAGTAGAATTCACAGGTTTAATGAACGAATGCGGCACTCAAGATCTGAGGTCTGGGAAAGGCTTGGTCGTTTGAACTCTTCATGTCCATCAGGACTTCATGCAGATGGTATGTGCTCATGTGAGTCTTTCCCAGTGGCTGAAGAATCTAGCACTCGAGCAAGCATTTCGAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCGCTTTCCCTGTCCATGGTCTCTCTCCCTGCCCCAGAATCGGTTGTTGACTCTTTCCCTCTTAAGTCTCACAAAAAGGTCGATGCAGCTGATGGCAGCAGTGATGCTGAACAATGTTACATATGCCTGGCAGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCCTGCAACCATGAATATCACATGTCGTGTGTTGACAAGTGGCTTAAGGAAATACACGGTGTATGTCCTCTTTGTCGTGGGAATGTTTGTGGAGGGTTCACGGAGTCTTCTGCCCACTCCGATGTGCCATCCCATTGA 1587 0.4594 MGSVNSRLGSRPPSSRVNRNTRFRLSSLLCGASTSRSTHQLDEHPSQLQVDSATEIDKGMHKVTEESSLSCTEAIIEATTSSDTRTESYGNTTVEGSSINLATSSQRTCLSECKELVPPYQVSAGHSRHESYRNSSSTASTLYVEQQSSDPVSVNVSANKDGVNDFDDPVVSGVSQISRETVHPRSSGPQEHGTSSSSEISVENHTDAFMAIPNPSSNPVPQVSNLPATSQFPEDESQRETIPSGLGILVSNRERVQGNDSVLQVDVVTISSNILSGSNVEANDHYARRNGRRLFWDAFSRRSSRRLGDSQTIVFSAGGADDPGSQDQWLVDFSGDFSNDGVGGASSGYMGSRIHRFNERMRHSRSEVWERLGRLNSSCPSGLHADGMCSCESFPVAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESVVDSFPLKSHKKVDAADGSSDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSAHSDVPSH* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2068 528 SMART ring_2 467 508 IPR001841 -
Dod05g2068 528 CDD mRING-H2-C3H2C2D_ZSWM2 466 509 - -
Dod05g2068 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 513 IPR013083 -
Dod05g2068 528 MobiDBLite consensus disorder prediction 174 200 - -
Dod05g2068 528 MobiDBLite consensus disorder prediction 122 200 - -
Dod05g2068 528 ProSiteProfiles Zinc finger RING-type profile. 467 509 IPR001841 -
Dod05g2068 528 MobiDBLite consensus disorder prediction 127 160 - -
Dod05g2068 528 Pfam Ring finger domain 466 509 IPR001841 -
Dod05g2068 528 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 525 - -
Dod05g2068 528 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 525 - -
Dod05g2068 528 SUPERFAMILY RING/U-box 449 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2068 Dod-Chr5 46628438 46632124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2068 381 513 C3H Transcription Factor Family AT5G45290 54.422 9.41e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2068 - - gmx:100783604 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2068 05 46628438 46632124 Dod05g2068 05 46628438 46632124 ECH