Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2065 ATGACTGCTGCCACCATGTGTGCGCAGGACGGTGAGCAAGTTGCACAAGATATGGAGATGGAGAACCTTGATAACACGACAAGTGCGTCATGCCCTTTGCATTGTGGTGATATCTTGCATACCCACATGGGCAACTTGGAAAAAGGCTCTTCCTTTAGACCTTCTACTGCAAATTCACTTCCTCTGGAAAGCATATGTGAGGATACAGAGATCGCAGACAAGAAGCACAACATGATGAACTTTCTCCCTGCTCTTCGATCTGGAGAGTGGTCTGATATTGGAGGTCGCCGTTACATGGAGGATACCCATATATGCATTGGAGACCTGGCAAAGAAATTTGGATATGATGCGCTGTGTGAGGAAGAAGCTGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCTCAATTTGTCCGTGATCATCTGCCTAGGGTGATTGTTGAGGATGCGGACTTTCCTTTGGAACTTGAGAAGGTGGTCACAAGGTCATTTTTGGAAACTGATGCAGAGTTTGCAAAAACATGCTCCGTTGAGTCTTCCCTCTCTTCTGGTACAACGGCACTGACTGCAATTATATTTGGAAGATCTTTACTTGTAGCCAATGCTGGAGACTGCAGGGCTGTCTTGTCCTGTCGTGGGGCGGCTATAGAAATGTCCAAAGATCATAGACCCTTATGCATTAAAGAAAGGATGCGGATCGAGTCCCTAGGTGGATTCATTGATGATGGTTACCTTAATGGCCAGTTAGGTGTCACTCGAGCTCTAGGTGACTGGCATCTTGAAGGAATGAAGCAAATGGACGGAAAAGAAGGACCACTGAGTGCTGAGCCTGAACTTAGATCGATGACATTGACCAAAGAAGATGAGTTCTTGATAATTGGTAGTGATGGAATCTGGGACGTTTTTAGCAGCCAAAATGCTGTCGAATTCGCTCGGAGGAGGCTTCAACAGCATAATGATGTGAAGCAATGTTGCAAGGAAATAATAGAGGAAGCAATAAAGAGAGAAGCAACAGATAACTTGACAGTTGTGATGGTATGTTTTCATTCAGATCCACCACCACCTGTGGTTGTAGAAAAGGCAAGAGTCAGGAGAATCATATCTGCTGAGGGACTTCGGAATCTTAATTGTCTGCTAGAAGGATAG 1158 0.4508 MTAATMCAQDGEQVAQDMEMENLDNTTSASCPLHCGDILHTHMGNLEKGSSFRPSTANSLPLESICEDTEIADKKHNMMNFLPALRSGEWSDIGGRRYMEDTHICIGDLAKKFGYDALCEEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLETDAEFAKTCSVESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSCRGAAIEMSKDHRPLCIKERMRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKQMDGKEGPLSAEPELRSMTLTKEDEFLIIGSDGIWDVFSSQNAVEFARRRLQQHNDVKQCCKEIIEEAIKREATDNLTVVMVCFHSDPPPPVVVEKARVRRIISAEGLRNLNCLLEG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2065 385 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Dod05g2065 385 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 6 373 - -
Dod05g2065 385 Pfam Protein phosphatase 2C 95 344 IPR001932 -
Dod05g2065 385 CDD PP2Cc 86 352 IPR001932 -
Dod05g2065 385 SUPERFAMILY PP2C-like 75 353 IPR036457 -
Dod05g2065 385 SMART PP2C_4 76 350 IPR001932 -
Dod05g2065 385 Gene3D - 68 355 IPR036457 -
Dod05g2065 385 ProSiteProfiles PPM-type phosphatase domain profile. 86 352 IPR001932 -
Dod05g2065 385 PANTHER PROTEIN PHOSPHATASE 2C 6 373 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2065 Dod-Chr5 46585081 46588652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2065 77 385 PP2C-type Phosphatase Gene Family AT2G25620 60.064 1.92e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Dod05g2065 PP2C 5.4e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2065 K14803 - gmx:100782648 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2065 05 46585081 46588652 Dod05g2065 05 46585081 46588652 ECH
Dod05g2065 05 46585081 46588652 Dod03g1748 03 25861329 25865143 PCT