Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2049 ATGGGGAAGAAAAAGAATCAAGTAGGAGAAACAAGTGAAGATGGTGGAAATCAAAGCAAAGTTGGAGATAGCAGCAGCCCCAAATCATATGACAATGATACTATGGCATTCATATCCATGTCTCAGGATTTGAAGGATGAGGGGAACAAGCTGTTCCAGAAGAGGGACCTTCAGGGAGCTTTACTGAAATATGAGAGAGCTCTCAAATTGCTTCCAAGGAATCATATAGATGTGTCCTATCTGAGGAGTAACATGGCTGCGTGCTACATGCAGATGGGACTCAGTGAGTACCCGAGGGCAATTCATGAATGCAATTTGGCTCTTGAAGTAACACCAAAATATAGCAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGGTTTAAATAGGCTTGATTTAGCTCTCATAGATGTTAGTACTGTTGTGAAGATGGAACCAGATAATGTCATGGCGTTGGAGATCGCAGAGAAGGTGAAAACTGCCCTTGAGGAGAAAGGATTAAGAGTAAATGGCACAATAATTGAGTTGCCTCCAGATTATGTGGAAACACCTAATGCTGTACGTCCAGAGAATGTAGTGAAGGAGAAGACACGCAAGAAGAAGAGCAATAAAAAGGTGGAGAAGGCTCCTGATATCAAGGCTGTGGAAAAGCAAGACAAGGAGGAATTTGAAGAGAATAAGGAGGAATTTGAAAAGCAAGACAAGGAGGAATTTGAAGAGAATAAGGCTGATCACGTTGTGGAGAAGAAGACCAACAAATCCAAAAAGAAGAAGGCCAAGGGAAAAAATGATGAGAAGAAGGCTGATATTAAGGAGATTGTAGAGGTGAAAAGTAATGGTAGGAGGGAAGATTTACCTAAGAAAACAGCAAAACTTATTTTTGGTGAGGATATAAGATGGGCTGAATTGCCTGGTCATTGCAGCCTCTTGCAGTTAAGAGAAGTTATTTGTGATAGATTCCCCAGCCTAGGAGCCATTCTTGTCAAATACAGGGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGATGAATTAAGATTGGCTGAAATAGGGTCTCAGGGTTCTATCCGGCTGTATATAGTAGAAGCTGCTCCTGAGCAGGATCCATTCTTTGAGAAACTCAAAGTAAAGGTGGGGGAAAAGGTTGGCATCAATTATGTACCAGGGAATGGTGTTGTGGTAAAAGCAAAGGAAATTATCAGATCATCTTGCATTGAGGATTGGATTGTTCAGTTTGCCAAATTATTCAAGAACCATGTTGGATTTGAATCTGACAGATATTTGGATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACAGTTACAAGTGAAGAGGCGCAAGACTTGTTTGACATGGCAGGAGATAAGTTTCAAGAGATGACTGCTCTAGCATTGTTCAACTGGGGGAATGTGCATATGTCCAGGGCGAGGAAGGAAGTATATTTCACAGAAGATTCTTCTAAAGAGCACCTACGTGAACAAATCCAAAGTTCATATGAATGGGCACAGAAAGAATAG 1536 0.4147 MGKKKNQVGETSEDGGNQSKVGDSSSPKSYDNDTMAFISMSQDLKDEGNKLFQKRDLQGALLKYERALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYEGLNRLDLALIDVSTVVKMEPDNVMALEIAEKVKTALEEKGLRVNGTIIELPPDYVETPNAVRPENVVKEKTRKKKSNKKVEKAPDIKAVEKQDKEEFEENKEEFEKQDKEEFEENKADHVVEKKTNKSKKKKAKGKNDEKKADIKEIVEVKSNGRREDLPKKTAKLIFGEDIRWAELPGHCSLLQLREVICDRFPSLGAILVKYRDQEGDLVTITSDDELRLAEIGSQGSIRLYIVEAAPEQDPFFEKLKVKVGEKVGINYVPGNGVVVKAKEIIRSSCIEDWIVQFAKLFKNHVGFESDRYLDFHELGMKLYSEALEETVTSEEAQDLFDMAGDKFQEMTALALFNWGNVHMSRARKEVYFTEDSSKEHLREQIQSSYEWAQKE* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2049 511 SUPERFAMILY TPR-like 42 157 IPR011990 GO:0005515
Dod05g2049 511 SMART PB1_new 287 364 IPR000270 GO:0005515
Dod05g2049 511 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Dod05g2049 511 SUPERFAMILY CAD & PB1 domains 289 372 - -
Dod05g2049 511 MobiDBLite consensus disorder prediction 11 32 - -
Dod05g2049 511 PANTHER PROTEIN CLMP1 3 511 IPR044517 -
Dod05g2049 511 CDD PB1 291 361 - -
Dod05g2049 511 MobiDBLite consensus disorder prediction 194 264 - -
Dod05g2049 511 Gene3D Tetratricopeptide repeat domain 39 168 IPR011990 GO:0005515
Dod05g2049 511 ProSiteProfiles PB1 domain profile. 287 364 IPR000270 GO:0005515
Dod05g2049 511 Coils Coil 213 241 - -
Dod05g2049 511 Gene3D - 281 364 - -
Dod05g2049 511 MobiDBLite consensus disorder prediction 204 250 - -
Dod05g2049 511 MobiDBLite consensus disorder prediction 1 32 - -
Dod05g2049 511 Pfam PB1 domain 289 361 IPR000270 GO:0005515
Dod05g2049 511 SMART tpr_5 115 148 IPR019734 GO:0005515
Dod05g2049 511 SMART tpr_5 79 114 IPR019734 GO:0005515
Dod05g2049 511 SMART tpr_5 41 74 IPR019734 GO:0005515
Dod05g2049 511 PANTHER PROTEIN PHOX3 3 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2049 Dod-Chr5 46440381 46441916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2049 29 148 Calmodulin-binding Proteins AT3G25230 30.597 6.14e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2049 - - gmx:100778972 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2049 05 46440381 46441916 Dod05g2049 05 46440381 46441916 ECH
Dod05g2049 05 46440381 46441916 Dod03g1731 03 25244985 25247160 PCT