Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1998 ATGGACATGGAGAAGAAGTGCGGTTGCTGGGGTGCCCTGAAACGCGGCGTAAGAGGTGCGTGCAAACCTTCAGCTTCAAGAGACTCTCCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGCAACTGAGACGAGATACCTGAATGCTAGCAATAGAGAACTATGTGCTCCCAATGAAGCTAGAATATCTTCTGATAATCCTGATCCCCCACCTCTGGAGAATAAGGCTCCTTGCCCTCTCCTTCAATTTACATTTCAAGAACTAAAAGCTGCAACTGGGAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGTTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACGGCCCCGGCGAAACCTGGGTCAGGGATTACGGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTACACCATCCTAACCTTGTGAAACTTATCGGCTACTGCATTGAAGATGATCAGAGGCTTCTTGTTTATGAGTTTATGACCCGTGGAAGTCTAGAGAATCATCTCTTCAGAAGAACTGTACCTCTTCCATGGGCCAACAGGGTTAAGATTGCACTTGGTGCAGCAAAAGGATTAGCCTTCCTCCATAATGGCCCAGAACCAGTCATTTATAGAGATTTTAAAACATCAAACATTTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCTGGGCCTCAAGGAGACAAGACACATGTTTCTACAAGAGTTGTTGGAACTTATGGCTATGCTGCTCCGGAATATGTCATGACAGGACACTTAACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTGCTTGAGATTTTAACAGGAAGAAGATCGATGGACAAGAAGCGCCCAAGTGGGGAACAAAATCTTGTTTCATGGGCTAGGCCATATTTGGCTGACAAGAGAAAACTATACCAACTTGTGGATCCTCGCTTGGAACTAAATTACTCTCTAAAAGGGGTGCAGAAAATCTCTCAGTTAGCTTACAATTGCCTCAGTAGAGACCCCAAATGCCGCCCTAACATGGATGAAGTTGTGAAGGCTCTGACTCCACTGCAGGATCTCAATGACCTTGCGATCTTGTCATATCACACTCGATTATCGCAACAAGGGAGACGGAAAAAGAAATCAGACTGGAACTCCACATATCACCTACACACAGTCCAAGAGCATGAGGGCTTCTCCCTTGAATGCTGGTGGCAAGCAGCATCGATGATAATAGGAAGTGATCCTCTTCTAAGTTATTGGCTCAATCATTGA 1341 0.4497 MDMEKKCGCWGALKRGVRGACKPSASRDSPNTIPRTSLVYDAATETRYLNASNRELCAPNEARISSDNPDPPPLENKAPCPLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWANRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYNCLSRDPKCRPNMDEVVKALTPLQDLNDLAILSYHTRLSQQGRRKKKSDWNSTYHLHTVQEHEGFSLECWWQAASMIIGSDPLLSYWLNH* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1998 446 Gene3D Transferase(Phosphotransferase) domain 1 183 394 - -
Dod05g1998 446 Pfam Protein tyrosine and serine/threonine kinase 101 376 IPR001245 GO:0004672|GO:0006468
Dod05g1998 446 CDD STKc_IRAK 103 379 - -
Dod05g1998 446 SUPERFAMILY Protein kinase-like (PK-like) 79 386 IPR011009 -
Dod05g1998 446 ProSitePatterns Protein kinases ATP-binding region signature. 103 135 IPR017441 GO:0005524
Dod05g1998 446 PANTHER OS01G0588500 PROTEIN 79 401 - -
Dod05g1998 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Dod05g1998 446 Gene3D Phosphorylase Kinase; domain 1 78 182 - -
Dod05g1998 446 PANTHER OS01G0588500 PROTEIN-RELATED 79 401 - -
Dod05g1998 446 ProSiteProfiles Protein kinase domain profile. 97 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1998 Dod-Chr5 45807745 45811684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1998 85 376 Glycoside Hydrolase AT3G07070 55.743 9.92e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dod05g1998 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1998 - - aprc:113848012 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1998 05 45807745 45811684 Dod05g1998 05 45807745 45811684 ECH