Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1996 ATGATGGTGGAGCTTCAGCTTGGTCTCGCTCTTCTCCCTACCAATCCTCTTGACCTCAATTCTCGTGCCTACGATGAACCCAACAAGAAGCCCCTTACCTTCTCTTCTCCCTTCAACACGAAACGTACTTTCTCCCAACTCTTTGACCATGCTTCTGCTGACAAAGATGTTACGCTTCCCACTCTGCCTCTCCTCCCATTAACGCCTAACCACGATGATGATGATCACCGTAGCAACTGCTCAACCACTATCATCACCAAGAGCGATGAGAATGATGTGGAAGCTGGCCCAGTGGGTTGGCCCCCAGTGAATTCCTGGAGGAAGAAGCTTCGTTACCGTGATCAGGATGAGGATGATGCAGGGAATGATCAAATGGTGTGGATTCATCATCATGATGGACGCCACGCTTCTGTTGGCCCCAGAGGATCCAATAATACACTGTACGTGAAGGTGAAGATGGAGGGTGTAGGGATTGCACGCAAGGTTGATCTCAGCATGCATCACTCATTTGAGACGCTCAAGGATACCTTATTGGACATGTTTGGAAAATGTCATCAATTTTCTAAGCGCTATGAACTGGCTTATCAGGACGAAGAGGGCGATTGGCTTCTTGCTGAAGATGTGCCATGGAGGCAAGTGCATCCTACCTAG 651 0.4885 MMVELQLGLALLPTNPLDLNSRAYDEPNKKPLTFSSPFNTKRTFSQLFDHASADKDVTLPTLPLLPLTPNHDDDDHRSNCSTTIITKSDENDVEAGPVGWPPVNSWRKKLRYRDQDEDDAGNDQMVWIHHHDGRHASVGPRGSNNTLYVKVKMEGVGIARKVDLSMHHSFETLKDTLLDMFGKCHQFSKRYELAYQDEEGDWLLAEDVPWRQVHPT* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1996 216 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 212 IPR003311 GO:0005634|GO:0006355
Dod05g1996 216 Pfam AUX/IAA family 38 183 IPR033389 -
Dod05g1996 216 SUPERFAMILY CAD & PB1 domains 140 211 - -
Dod05g1996 216 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 4 212 - -
Dod05g1996 216 Gene3D - 141 216 - -
Dod05g1996 216 MobiDBLite consensus disorder prediction 66 101 - -
Dod05g1996 216 ProSiteProfiles PB1 domain profile. 146 216 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1996 Dod-Chr5 45756354 45757322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1996 149 212 B3 DNA Binding Superfamily AT3G61830 37.879 4.42e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod05g1996 AUX_IAA 1.1e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1996 K14484 - gmx:100808466 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1996 05 45756354 45757322 Dod05g1996 05 45756354 45757322 ECH