Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1983 ATGTCGAGCTGCAGCATCGATGTTGCCCCCGAGCAACTCTGCTACATCCCTTGCAACTTTTGCAACATTGTTCTTGCGGTGAGCGTTCCATGCAGCAGCCTGTATGACATCGTGACCGTTCGATGTGGGCACTGCACCAATCTGTGGTCCGTGAACATGGCCGCGGCGTTTCAGCCACTGTCATGGCAAGATGTTCAGGCACCTGGGCACTGCAACCCAGAGTATAGGATTGACACTGGATCCTCCTCCAAATGCAACAACAGGCATGCAATGCGTGCACCTACCAATCATGTAACTGAGGAAAGGGTTGTGAGCAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATCCAGAGGATTAAGGCGAATAATCCTGATATCAGTCACAGAGAGGCATTCAGTACTGCTGCAAAGAACTGGGCACATTTTCCCCATATTCATTTTGGGCTGATGTTGGAGAACAGCAAATCAAGCTAA 504 0.502 MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLYDIVTVRCGHCTNLWSVNMAAAFQPLSWQDVQAPGHCNPEYRIDTGSSSKCNNRHAMRAPTNHVTEERVVSRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLENSKSS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1983 167 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Dod05g1983 167 Gene3D High mobility group box domain 97 154 IPR036910 -
Dod05g1983 167 PANTHER AXIAL REGULATOR YABBY 5 1 165 - -
Dod05g1983 167 PANTHER PROTEIN YABBY 6-RELATED 1 165 IPR006780 GO:0007275
Dod05g1983 167 SUPERFAMILY HMG-box 103 152 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1983 Dod-Chr5 45587790 45591987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1983 8 167 C2C2-YABBY Transcription Factor Family AT2G26580 75.000 1.13e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dod05g1983 YABBY 4.6e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1983 K25796 - gmx:100499942 330.102