Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1972 ATGGTGCAATCAAGGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGATCATGGGTGTCTGAGATTCGCCACCCACTTCTGAAGAGAAGGGTGTGGCTAGGGACCTTTGAAACTGCAGAGGAAGCTGCTCGTGCCTATGATCAAGCTGCAATATTGATGAGTGGTCGAAATGCAAAGACCAATTTCCCAATAACGCAAACTCCAGAGGGTGATCCAATAAAGACCACTACCACCACTGAGGACACTACCCCAGCTTCCACATCGAAGGATCTAGAAGAAATCCTACACGCCAAGCTTCGAAAATGTGGGAAGGTGCCTTCGCCTTCCATGACATGCTTGAGGCTTGACACTGAGAACTCTAACATTGGGGTTTGGCAGAAGCGTGCTGGGCAGCGTTCTGATTCGAATTGGGTGATGAGGGTTCAGCTTGGAAAGAAGAAGAGTGGTGATGCCCATGAGGGTGAGGATATTATTGGTAATTCTCTGCCCTCTTCTTCTTCTTCTTCTGATCATCGGTCTCTGACTTCAGTGGTGGCCGGTGATCAGGAACTCGTGAGGGCAGAGATTGATGAGGAAGAGCGGATTGCACTGCAAATGATCGAAGAGCTCCTCAACAGGAACTGCCCTAGCCCATCGTTTAACACTATTGAAGAAAGTGATGATAATGATGCCAGCTTTCTTCTTTAA 687 0.4847 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPIKTTTTTEDTTPASTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSNIGVWQKRAGQRSDSNWVMRVQLGKKKSGDAHEGEDIIGNSLPSSSSSSDHRSLTSVVAGDQELVRAEIDEEERIALQMIEELLNRNCPSPSFNTIEESDDNDASFLL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1972 228 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Dod05g1972 228 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Dod05g1972 228 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 215 - -
Dod05g1972 228 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Dod05g1972 228 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Dod05g1972 228 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Dod05g1972 228 MobiDBLite consensus disorder prediction 159 176 - -
Dod05g1972 228 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Dod05g1972 228 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Dod05g1972 228 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Dod05g1972 228 MobiDBLite consensus disorder prediction 145 176 - -
Dod05g1972 228 MobiDBLite consensus disorder prediction 61 88 - -
Dod05g1972 228 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1972 Dod-Chr5 45423365 45424985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1972 1 207 AP2-EREBP Transcription Factor Family AT1G15360 57.477 9.20e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod05g1972 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1972 - - gmx:100787517 318.546