LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g1957	ATGCAGACAGGAGAGGCTGTGAACCCAAAAGCTTACCCTTTGGCAGATGCCCAGTTGACAATAACCATACTGGACCTTGTTCAACAAGCTACCAACTACAAGCAGCTCAAAAAAGGCGCTAATGAAGCTACTAAGACACTGAACAGGGGTATATCTGAGTTCGTTGTCATGGCTGCTGACGCTGAGCCCCTTGAGATTCTTCTCCACCTCCCTCTACTTGCCGAGGATAAAAATGTGCCCTATGTGTTTGTCCCATCAAAACAAGCACTTGGGCGAGCTTGTGGGGTTACCCGGCCAGTGATTGCTTGTTCTGTGACAACCAATGAAGGGAGTCAATTGAAGTCTCAAATACAGCAACTAAAGGATGCTATTGAGAAGCTAATGATTTGA	390	0.4641	MQTGEAVNPKAYPLADAQLTITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLMI*	130

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g1957	129	PRINTS	Ribosomal protein L7A/RS6 family signature	71	81	IPR018492	-
	Dod05g1957	129	PRINTS	Ribosomal protein L7A/RS6 family signature	55	68	IPR018492	-
	Dod05g1957	129	PRINTS	Ribosomal protein L7A/RS6 family signature	36	50	IPR018492	-
	Dod05g1957	129	PRINTS	Ribosomal protein L7A/RS6 family signature	81	95	IPR018492	-
	Dod05g1957	129	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	4	129	-	-
	Dod05g1957	129	Gene3D	-	1	129	IPR029064	-
	Dod05g1957	129	PRINTS	High mobility group-like nuclear protein signature	9	22	IPR002415	GO:0003723\|GO:0005730
	Dod05g1957	129	PRINTS	High mobility group-like nuclear protein signature	83	95	IPR002415	GO:0003723\|GO:0005730
	Dod05g1957	129	PRINTS	High mobility group-like nuclear protein signature	39	49	IPR002415	GO:0003723\|GO:0005730
	Dod05g1957	129	PRINTS	High mobility group-like nuclear protein signature	22	37	IPR002415	GO:0003723\|GO:0005730
	Dod05g1957	129	SUPERFAMILY	L30e-like	7	127	IPR029064	-
	Dod05g1957	129	PANTHER	NHP2-LIKE PROTEIN 1	4	129	-	-
	Dod05g1957	129	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	24	112	IPR004038	-
	Dod05g1957	129	ProSitePatterns	Ribosomal protein L7Ae signature.	74	91	IPR004037	GO:0042254\|GO:1990904

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g1957	Dod-Chr5	45251024	45254329	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g1957	36	125	Cytoplasmic Ribosomal Protein Gene Family	AT2G47610	28.889	3.68e-06	42.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g1957	K12845		-	csv:101222939	233.032