Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1950 ATGGTGTGGACTCTAAATCTAACTCGCCCCTCTCGATACCGTTACAACGGTTTTTCTGCTTCCAACGGTGATGACGAGAACGGTTACAACCGTTCTGATCCCAGGCCACGTGGCAGGGGCGGTTACGTAACTGGCCGTTCTGGTGGTCGCGGGCGTGGCCGGAGGTTCTCTCGTACGGAAAATGACTACTGCTCTAACCGGTACGACCGGTCCCCGTTCGCCGTTTCTGACGACTTCAACGCGCTAGATTTGAACAGCGAAGCTGAGAACAATGGCGGCGGAGGCATCAATTTCGACGCGTACGAATCGGTTCCGGTGAAGGTAAGCGGCGAGAACGTGCCACCGCCGGTGAACGCGTTCGCGGAGACGGACCTTGACGAAGCTCTGAAGGTGAACATCGAGCGGTGCAAGTACGTGAAGCCAATGCCGATTCAGCGTTACGCGATTCCCATTGCTTCTGGGGTTCGTGACTTGATGGCGTGCGCGCAGACAGGGTCTGGTAAAACGGCGGCGTTTTGTTTACCGATCATATCTGGGATTCTGAAGGACCGTTCTGGGTTTTCATCTATGACTCGTGGTGGCATTGTTGCGTATCCAATGGCGCTTATTCTTTCTCCTACTAGGGAGTTGTCTTGTCAGATACACGATGAAGCCAAGAAGTTTGCTTATCAAACTGGAGTGAAGGTGGTTGTTGCTTATGGTGGCGCTTCTATGACTCAGCAGCTCCGCAATTTGGAAAGGGGTGTTGACATCCTTGTTGCGACTCCTGGGCGTTTGGTGGATATCATTGAGAGAGAAAGGGTTTCGCTAGCAAAAATAAAGTATCTTGCATTGGATGAGGCTGACCGAATGTTGGACATGGGTTTTGAGCACCAGATACGTAAGATTGTTGAGCAGATGCACATGCCTCCTCCTGGTGTTAGACAGACAATGCTTTTCAGTGCTACATTCCCTGATGATATACAGAAGCTTGCATCTGACTTCCTATCAAACTACATATTCCTATCTGTTGGAAGGGTTGGTTCAAGCACTGAGCTGATTGTACAGAAAGTTGAACATGTTCAGGATATGGATAAAAGAAAACATCTTATGGATCTCCTCCATGGTCAAAGGGCACATGGTGTCAGCGGGAGGCCAGCTCTGACTCTTGTATTTGTTGAAACAAAGAGGGGAGCGGATATTTTGGAACATTGCTTGTCGAGAAATGGGTTTTCTGCTATTGCAATACATGGTGACAAAGTTCAAATGGAGAGGGAACGAGCTTTAAGATCTTTCAAAAGTGGTGTTACGCCTATTATGGTGGCAACTGATGTTGCTTCCCGAGGTTTGGATATCCCGCATGTGGCCCATGTCATCAATTTTGACTTGCCAAGAGACATAGATGACTACGTTCACAGAATTGGAAGAACTGGTCGTGCTGGCAAGTCTGGTTTAGCTACCGCCTTCTTCAGCAACAAGAATATTCCTCTTGCAAAGCCCCTTGTTGGACTCTTGCAGGAAGCAAAACAAGAAGTTCCATCTTGGCTGAGCCAGTATGCCGAGGGTTCATCTTATAGTGGTGGTAGGCCATCGACCTCAGCGGAATGGCAGTGGAAGGTATGGTGGCCGTGA 1611 0.4922 MVWTLNLTRPSRYRYNGFSASNGDDENGYNRSDPRPRGRGGYVTGRSGGRGRGRRFSRTENDYCSNRYDRSPFAVSDDFNALDLNSEAENNGGGGINFDAYESVPVKVSGENVPPPVNAFAETDLDEALKVNIERCKYVKPMPIQRYAIPIASGVRDLMACAQTGSGKTAAFCLPIISGILKDRSGFSSMTRGGIVAYPMALILSPTRELSCQIHDEAKKFAYQTGVKVVVAYGGASMTQQLRNLERGVDILVATPGRLVDIIERERVSLAKIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGVRQTMLFSATFPDDIQKLASDFLSNYIFLSVGRVGSSTELIVQKVEHVQDMDKRKHLMDLLHGQRAHGVSGRPALTLVFVETKRGADILEHCLSRNGFSAIAIHGDKVQMERERALRSFKSGVTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSNKNIPLAKPLVGLLQEAKQEVPSWLSQYAEGSSYSGGRPSTSAEWQWKVWWP* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1950 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Dod05g1950 536 MobiDBLite consensus disorder prediction 14 58 - -
Dod05g1950 536 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 48 522 - -
Dod05g1950 536 Gene3D - 337 517 IPR027417 -
Dod05g1950 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 513 IPR001650 -
Dod05g1950 536 SMART ultradead3 137 350 IPR014001 -
Dod05g1950 536 Gene3D - 77 336 IPR027417 -
Dod05g1950 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 522 - -
Dod05g1950 536 CDD SF2_C_DEAD 347 483 - -
Dod05g1950 536 Pfam Helicase conserved C-terminal domain 360 474 IPR001650 -
Dod05g1950 536 CDD DEADc_DDX3_DDX4 120 341 IPR044763 GO:0003724|GO:0005524
Dod05g1950 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 490 IPR027417 -
Dod05g1950 536 Pfam DEAD/DEAH box helicase 143 324 IPR011545 GO:0003676|GO:0005524
Dod05g1950 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 335 IPR014001 -
Dod05g1950 536 SMART helicmild6 393 474 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1950 Dod-Chr5 45157637 45161668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1950 116 506 Eukaryotic Initiation Factors Gene Family AT3G19760 32.323 3.78e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1950 K11594 - gmx:100817549 699.893