LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g1938	ATGGACGAAGATTTGGTGAAGCGCAACACCGATTGCGTCTATTTCTTGGCCTCTCCCCTCACTTGCAAGAAGGGGGCTAAATGCGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGTTATCCGGCAATTGCCTTAATCCTGCTTGTGCTTTTCGACACCCTCCGTTGGATGGGCATACTGGAGTGCCATCTGAACCTGCACAACCTTCATTACCTGCAAACAAGACAATGGCTCCCTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGAGACAGATGCTCTTTTTTGCACGGTGCTGATGATAGCTTTTTGACTGTAAAGCCCGTGAAGAATGACCAGGGAGGCACTGATGCACTCAAACCAGAAAAAAAGGTGTCATCAGGAAATAAAACAAGTGTAGCATCCGCACAAAATGAAACACATGTTGACCCATCTTTAACCCCAAAGGCCTTGTCTGATTTCAAGCCTACGCCTAAGGAAGATCTTCAACTACCTTTACCCAAAAATGCTAAACAGCAAGGTGATTGCCCTGAGATTTCTTCTTTTGAGTATGAAGAAGCTGCAGTTTCTAGGTCAGAGTCTTTATATCTGGATGAAGGATTTGTTCACACGTCTCATTTAGGCACTGAGCAGCATTCAGAGGAGCTAGTAAATGGTCACATAGAGCCTGAGGAGCGGTGGGAATCATCCCCGGGATTTGATGTTCTTGTTCATGATGAATCGGAGAACATGGGTTTTGAGGATGATTCTGAATATTTGCCAGTGCTTGACAGGGAACACCAGGAATTGAATGAGCAATACATGGGTTATGAATTTAAAGACCCAGATGAGTATGATACTATGTGTCCAGAAGCTGACATTCTATATGAACCAGAAATGTATGATGATTATAGATGTTTAGATAGAGATCTTACGCATTCTAATGGCAGAAGAGTCCGTGCTCATTCCAGAGAGATAATCTTGGATTCTATATTGGCCAGAAAAAGGTTTCGGATGACCGATATGGTTGCTTGTGATAGGAACCTAGATCTACGAGATCATCTGAGGAGACGCAGGGAAACTAGTGGTCCTCCGGGTACAGTTTTCTTAAGAAGACATGATTCATCTTCTTTGATGGTTCGAAACCAGGAAAGGCATCAAAGGCATTGCAATGAACAGCGGCTAAGTAGAAGATTAACATCACAAGTGGGATTTAGCACTATAGACTCAATGAGAGAGGTTGAAACTCTTTCAACTGCTAACAGGCAATGGTTAAATAGGAATTCCCAGCAACACAGGCCAAGGAAGCATTACAGAGAAAGACTAGATAAACGCCAGTTTCTTTCATCTAATGTCTCCAGGAAACCAGTTTTAAAGCAAAGGAAATTCTTTCATGAGTCCTCTACATTTACAGGACCCAAGTCTCTTGCAGAAATTAAAGAAGAGAAGCAGAAGACTAGAGAAAGTTTGCACTGCAAAAGCACATCAGCTGATTTCCAGGATCCCAAGCCTCTGAGTGAAATTCTCAAGGACAAGAGGAGTGTGGATCGAGTGAGAGATGGCAATTCCTGCAACAGTTGA	1584	0.4299	MDEDLVKRNTDCVYFLASPLTCKKGAKCEYRHNEIARLNPRDCWYWLSGNCLNPACAFRHPPLDGHTGVPSEPAQPSLPANKTMAPCYFFFNGFCNKGDRCSFLHGADDSFLTVKPVKNDQGGTDALKPEKKVSSGNKTSVASAQNETHVDPSLTPKALSDFKPTPKEDLQLPLPKNAKQQGDCPEISSFEYEEAAVSRSESLYLDEGFVHTSHLGTEQHSEELVNGHIEPEERWESSPGFDVLVHDESENMGFEDDSEYLPVLDREHQELNEQYMGYEFKDPDEYDTMCPEADILYEPEMYDDYRCLDRDLTHSNGRRVRAHSREIILDSILARKRFRMTDMVACDRNLDLRDHLRRRRETSGPPGTVFLRRHDSSSLMVRNQERHQRHCNEQRLSRRLTSQVGFSTIDSMREVETLSTANRQWLNRNSQQHRPRKHYRERLDKRQFLSSNVSRKPVLKQRKFFHESSTFTGPKSLAEIKEEKQKTRESLHCKSTSADFQDPKPLSEILKDKRSVDRVRDGNSCNS*	528

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g1938	527	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	84	106	IPR000571	GO:0046872
	Dod05g1938	527	ProSiteProfiles	Zinc finger C3H1-type profile.	37	63	IPR000571	GO:0046872
	Dod05g1938	527	ProSiteProfiles	Zinc finger C3H1-type profile.	81	108	IPR000571	GO:0046872
	Dod05g1938	527	MobiDBLite	consensus disorder prediction	114	183	-	-
	Dod05g1938	527	SMART	c3hfinal6	7	34	IPR000571	GO:0046872
	Dod05g1938	527	SMART	c3hfinal6	39	62	IPR000571	GO:0046872
	Dod05g1938	527	SMART	c3hfinal6	81	107	IPR000571	GO:0046872
	Dod05g1938	527	PANTHER	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	1	515	-	-
	Dod05g1938	527	Gene3D	-	74	155	-	-
	Dod05g1938	527	Gene3D	-	3	63	-	-
	Dod05g1938	527	MobiDBLite	consensus disorder prediction	481	527	-	-
	Dod05g1938	527	MobiDBLite	consensus disorder prediction	481	495	-	-
	Dod05g1938	527	SUPERFAMILY	CCCH zinc finger	81	106	IPR036855	GO:0046872
	Dod05g1938	527	MobiDBLite	consensus disorder prediction	133	153	-	-
	Dod05g1938	527	ProSiteProfiles	Zinc finger C3H1-type profile.	7	35	IPR000571	GO:0046872
	Dod05g1938	527	Pfam	Zinc-finger containing family	7	63	IPR041686	-
	Dod05g1938	527	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE	1	515	-	-
	Dod05g1938	527	MobiDBLite	consensus disorder prediction	505	520	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g1938	Dod-Chr5	45059298	45062658	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Dod05g1938		zf-CCCH_3	1.6e-11	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g1938	-		-	aprc:113847503	807.364