Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1934 ATGAGTTTCCCTGATAATCTACCAACCTTCACGATGTCACCACCAAGATTTGCAACAACCGATGCCATTGACGTGAGGCTTCAATTCCCAATGAACAATGAATCATTGGACTCACTTTCACATTTGGATCAACCCCCTTTGCCCAAGAGGGCAAGAACCTCGGATGACAACAACCATGACAACAATAACCCCAGGATGATGATGGTGAACCCGCCAAACCCTGCAGTGAACAAAGGAACCAGCCACATTTTCTTCAAGACAAGAATGTGTGCAAAGTTCAGGCTTGGAGCATGTAGGAATGGTGAGAACTGCAACTTTGCACATGGTGTTGAGGACATGAGGCATCCACCCCCTAATTGGCAGGAACTTGTAGGGTTGCGCAGCAGTGATGAAAGGTCTTCAGGGAATTGGGATGATGATCACAAGATCATCCACAAGATGAAGATTTGCAAGAAGTTTTACAATGGGGAGGAGTGCCCTTATGGTGATAAGTGCAATTTTCTTCATGAGGACCCTGGAAAGTTCAGGGATGATTCTTCTGGTGGGTGGTTTAGGGAGAGCTCAGCAATAAGCATAGGGACTAATGGGTCCCCACCAAAGACATATGGTGATGGCTCTAAATCTAATAGTTCTGAAGGTAGCAATAGGGGTTTGAACAGTGGTGGTTTGAATGGTTCTAGGGGGAATGTGAGGTCTACTTTTTGGAAGACTAAGCTGTGTGTCAAATGGGAGACAACAGGCCACTGCCCCTTTGGTGGGGACTGTCACTTTGCCCATGGGCAAGCAGAGTTACAAGTTCCCGGCATACGCATTGAAGCAGAAGCTGCAGCAGCCATTTCAGCTTCAACCAAAGCTACCATCCCAACTTTGCCAAATGCTACATCATCTGTTCATGCCAATGACGCGCATCCTAGCAGCACAGCAAGTGCACCTCAGGCAAATGAAGAGGGGAAGCGTAACAAGTCTTTACTGAAGTGGAAGGGGCTCAAGAAGATCGATCGAATTTATGCTGATTGGCTTGATGATTTCCCTCTTGTGCACAACTTGCCAAGTGGAGTGGAAACCTGA 1068 0.47 MSFPDNLPTFTMSPPRFATTDAIDVRLQFPMNNESLDSLSHLDQPPLPKRARTSDDNNHDNNNPRMMMVNPPNPAVNKGTSHIFFKTRMCAKFRLGACRNGENCNFAHGVEDMRHPPPNWQELVGLRSSDERSSGNWDDDHKIIHKMKICKKFYNGEECPYGDKCNFLHEDPGKFRDDSSGGWFRESSAISIGTNGSPPKTYGDGSKSNSSEGSNRGLNSGGLNGSRGNVRSTFWKTKLCVKWETTGHCPFGGDCHFAHGQAELQVPGIRIEAEAAAAISASTKATIPTLPNATSSVHANDAHPSSTASAPQANEEGKRNKSLLKWKGLKKIDRIYADWLDDFPLVHNLPSGVET* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1934 355 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 344 - -
Dod05g1934 355 SUPERFAMILY CCCH zinc finger 144 171 IPR036855 GO:0046872
Dod05g1934 355 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Dod05g1934 355 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Dod05g1934 355 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Dod05g1934 355 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Dod05g1934 355 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Dod05g1934 355 SUPERFAMILY CCCH zinc finger 233 265 IPR036855 GO:0046872
Dod05g1934 355 Pfam CCCH-type zinc finger 148 169 IPR041367 -
Dod05g1934 355 MobiDBLite consensus disorder prediction 295 319 - -
Dod05g1934 355 SUPERFAMILY CCCH zinc finger 82 115 IPR036855 GO:0046872
Dod05g1934 355 MobiDBLite consensus disorder prediction 36 73 - -
Dod05g1934 355 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Dod05g1934 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Dod05g1934 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 261 IPR000571 GO:0046872
Dod05g1934 355 MobiDBLite consensus disorder prediction 295 316 - -
Dod05g1934 355 Gene3D - 228 266 - -
Dod05g1934 355 Gene3D - 142 173 - -
Dod05g1934 355 Gene3D - 77 115 - -
Dod05g1934 355 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 344 IPR045877 GO:0003729
Dod05g1934 355 MobiDBLite consensus disorder prediction 188 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1934 Dod-Chr5 45020265 45022996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1934 236 270 C3H Transcription Factor Family AT1G68200 60.000 5.72e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod05g1934 zf-CCCH 4.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1934 - - aprc:113846184 479.174