Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1915 ATGAAAGGGGAAGTGCAGCTGCAGCCACCGCAGGTTCTGCAAAACCCTAGTGATTCCGACCCTTTGCTCGATAATCAGGAGGATGATGATGTGTCCCCTGGAAGCTCCTCTGAGATCAAAGATGATGAGGACTTGGAGGCTGGCTCACTTCCTTGCTGTCGAATTTGCCTTGAATCTGATTCCGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAATTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGATTTGCCTTCTCTCACTGCACTACTTGCAAAGCCCAATTTCATCTTAGGGTTGAATTATATGAGGATAACTCTTGGCGCAAAATGAAGTTCAGAATTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTCGCTGTACAGACTGTGATTGCAGCTATGGGTGGCTTTGCATACATCATGGACAAAGATGGGAACTTCAGGAACTCTTTTGATGATGGTTGGGATAGGATACTGTCAAAACATCCTATACCATTTTATTATTGTATTGGAGTGCTGGCCTTCTTTGTACTAATTGGATTTTTCGGTCTCATACTACATTGCTCCTCCCTCAACAACAACGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCATGCTTTGCCCTTGTGGTGGTTTTCGTTGTCATCTTTGCTATTCTTGGTATAGCTTATGGTTTCCTTGCAGCCACCATGGCCATCCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTTCGCGGGTCTTATTTCCCACCAAAGTTGGACCCAGAACATGAAGCTCGCTTGAAAATGCTTAAGCTTTTGTGA 927 0.4498 MKGEVQLQPPQVLQNPSDSDPLLDNQEDDDVSPGSSSEIKDDEDLEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELYEDNSWRKMKFRIFVARDVFLVFLAVQTVIAAMGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNNNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGSYFPPKLDPEHEARLKMLKLL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1915 308 ProSiteProfiles Zinc finger RING-CH-type profile. 45 110 IPR011016 GO:0008270
Dod05g1915 308 SMART ringv_2 52 104 IPR011016 GO:0008270
Dod05g1915 308 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 308 - -
Dod05g1915 308 Pfam RING-variant domain 53 103 IPR011016 GO:0008270
Dod05g1915 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 118 IPR013083 -
Dod05g1915 308 SUPERFAMILY RING/U-box 50 108 - -
Dod05g1915 308 CDD RING_CH-C4HC3_MARCH 53 104 - -
Dod05g1915 308 MobiDBLite consensus disorder prediction 1 44 - -
Dod05g1915 308 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1915 Dod-Chr5 44782217 44786637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1915 1 308 C3H Transcription Factor Family AT1G11020 80.062 1.71e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1915 - - gmx:100818950 583.178