Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1902 ATGAAGGACCCAAAGGAGGATCAAGAGAAATCTAGGAAGGCTCTGCAGAAATCCATGGACCTTAGAAGAAGGGGTAGAAGAAGAAGCCATCAGTGCAACAAGCCAGAGAAGTTACAAGAAACAGGACTTGTTGATTCCTCTGCTTCTTCCAAAAGTCTTGTGTTTGCTGCCAGGCCTGGCTATGGCCAGCTTGGTACAAAGTGTCTGGTGAAGGCTAACCACTTCCTGGCAGATATATCAGCATCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAAGTCACTTCTCGCAAAACAAGCAAAGCTATCATAGCTGAGTTGGTGAGGCTTCACCGGAACACTGACTTGGGGATGAGGCTTCCTGTCTATGATGGAGGAAGGAACCTTTACACTGCTGGCTTGCTTCCTTTCACATGCAAAGAGTTCACCATACTATTGATTGAGGATGATGAGGGTAGTGGTAGCAACAGGGAAAGAGAATTCAAAGTAGTAATCAAGTTTGCAGCTCGTGTTAGCATGCATCAGTTACGTGAGCTTCTGAGTGGGAAACAAGTGGACACACCACAAGAAGCGCTTAGTGTCATTGACATTGTGCTGAGGGAGCTTGCAGCTCAGAGTTACGTATCAATTGGGAGGTTTCTCTATTCTCCTGATTTAAGAAAACCACAGCAGTTAGGTGGTGGCTTAGAATCATGGCGTGGCTTCTACCAAAGCATAAGGCCTACTCAGATGGGACTGTCACTTAATATTGACATGTCATCAATGGCGTTTATTGAGCCACTCCCTGTGATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCACTCAAAGCCACTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCATTAAGAGGTGTGAAAGTTGAAGTTACACATAGAGGAAGCTTTCGAAGAAAGTACAGGATATCAGGATTAACTTCACAGCCAACCAGGGAGCTTAACTTCCCTCTTGATGAGAAAATGAATATGAAATCAGTGGTTGATTATTTTCAAGAAATGTATGGATATACAATCAAATATCCTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCCATGGAGGCATGCAAGATAGTTGGAGGCCAGAGATATACTAAAGGGCTAAATGAAAAGCAGATAACCTCTCTCTTAAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTACAGACAATTCAGCAGAATGATTATGAATATAATCCCTATGCAAAGGAGTTTGGTATCAGTGTAGACAGCAAGCTTACATCAGTTGATGCTCGGGTTCTCCCTGCTCCATGGTTGAAATATCATGACACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGCACGGTAAGATATTGGGCATGTATCAATTTCTCAAGAAGTGTTCAAGAAAATACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTTAGTCAAGACCCTGTTATTCCGATACACTCAGCAAGACCAGATCAAGTAAAGAAGGCCTTGAAGTATGTACATTCTGCTGCACTAGACAAACTTGGTGGGAAGGAGATAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTCGGGTTGATTTCTCAGTGCTGTCTTACAAAGCACGTATTCAAGATTAACAGACAGTACTTGGCAAATGTAGCGCTAAAAATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGACTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCGCAGGACTGGCCGGAAGTGACGAAGTATGCAGGGTTGGTCTGCGCTCAGCCTCATCGCGAAGAACTCATTCAAGATCTTTTCAAATGTTGGAAGGATCCTCATAATGGTGTAGTTTATGGTGGCATGATCAGAGAGCTCTTACTCTCATTTAAGAAGGCAACCGGACAGAAGCCATTGAGGATAATTTTTTACAGGGATGGGGTGAGCGAAGGGCAATTCTACCAAGTTTTGCTATATGAGCTTGATGCCATTCGTAAGGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGCATCACACTAGACTCTTCTCAAGCAATCATGACGACAGGAACAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCAACTGAATTCGATTTCTATTTATGCAGTCATGCGGGTATTCAGGGCACAAGTAGACCAGCTCACTATCATGTTCTATGGGACGAGAACAATTTCACTGCCGATGAAATTCAGTCTCTGACCAACAACTTATGCTACACCTATGCAAGATGTACAAGATCTGTTTCTGTAGTCCCTCCTGCATACTATGCTCATCTGGCAGCATATAGAGCTCGATTCTACATGGAACCTGGTGTCTCTGAGATTTCTAAACAGCGTGGTGCAAGATCAAAAGATGGTCCAGTTCGGCCACTACCAGCTCTGAAAGAAAAGGTGAAGAATGTAATGTTTTACTGTTGA 2724 0.4291 MKDPKEDQEKSRKALQKSMDLRRRGRRRSHQCNKPEKLQETGLVDSSASSKSLVFAARPGYGQLGTKCLVKANHFLADISASDLSHYNVKITPEVTSRKTSKAIIAELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFTCKEFTILLIEDDEGSGSNREREFKVVIKFAARVSMHQLRELLSGKQVDTPQEALSVIDIVLRELAAQSYVSIGRFLYSPDLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRISGLTSQPTRELNFPLDEKMNMKSVVDYFQEMYGYTIKYPHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNDYEYNPYAKEFGISVDSKLTSVDARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQENTARGFCQQLVQMCQISGMEFSQDPVIPIHSARPDQVKKALKYVHSAALDKLGGKEIELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHNGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSSNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPGVSEISKQRGARSKDGPVRPLPALKEKVKNVMFYC* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1902 907 SUPERFAMILY Ribonuclease H-like 539 871 IPR012337 -
Dod05g1902 907 SMART DUF1785_2 209 261 IPR014811 -
Dod05g1902 907 Pfam PAZ domain 266 392 IPR003100 GO:0005515
Dod05g1902 907 SMART PAZ_2_a_3 266 398 IPR003100 GO:0005515
Dod05g1902 907 Gene3D - 619 907 IPR036397 GO:0003676
Dod05g1902 907 MobiDBLite consensus disorder prediction 1 43 - -
Dod05g1902 907 Pfam N-terminal domain of argonaute 67 200 IPR032474 -
Dod05g1902 907 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 17 906 - -
Dod05g1902 907 MobiDBLite consensus disorder prediction 1 18 - -
Dod05g1902 907 Pfam Piwi domain 551 870 IPR003165 GO:0003676
Dod05g1902 907 ProSiteProfiles PAZ domain profile. 262 376 IPR003100 GO:0005515
Dod05g1902 907 Pfam Argonaute linker 1 domain 210 259 IPR014811 -
Dod05g1902 907 ProSiteProfiles Piwi domain profile. 550 871 IPR003165 GO:0003676
Dod05g1902 907 SMART Piwi_a_2 550 871 IPR003165 GO:0003676
Dod05g1902 907 Pfam Mid domain of argonaute 459 536 IPR032473 -
Dod05g1902 907 Gene3D paz domain 256 380 - -
Dod05g1902 907 PANTHER PROTEIN ARGONAUTE 10 17 906 - -
Dod05g1902 907 CDD Piwi_ago-like 420 870 IPR045246 -
Dod05g1902 907 Pfam Argonaute linker 2 domain 404 448 IPR032472 -
Dod05g1902 907 Gene3D - 440 613 - -
Dod05g1902 907 CDD PAZ_argonaute_like 261 375 - -
Dod05g1902 907 SUPERFAMILY PAZ domain 257 416 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1902 Dod-Chr5 44656192 44662443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1902 55 907 Eukaryotic Initiation Factors Gene Family AT5G43810 75.029 0.0 1400