Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1899 ATGACGATGGACGACGAGAGCTCCATATATGTCGGGGGTCTCCCTTACGACGCCACCGAACAAACTATCCGCTCCGTCTTCAATTTGTATGGCGCCATCCTTGATGTCAAGATTATCAATGACCATCGCACTAGGGGCAAGTGTTATTGTTTCGTAACTTTCACGAATCCTAGGTCAGCACTCGATGCAATCAACGACATGAATGGCAGGACCATTGATGGGCGCGTTGTTAAAGTGAATGGGGTTAGGACTCGTGGTGGGAGGTCGAATTTCGGTAGAGAGCGTAATCATCATGGTGGTGAGAGGAATGGAGACTGGGATCGCGGTAGAGATCGAGACCGTGGCTATGATTATGATAGGGATGGACACAGGAATAGGAATGGCGATTGGGATCGAGATTGGGATCGAGATCGCGATAGGTCGCGAGACCCTGACCAGGACAGGGATAGAAGGTTTGAGCATATGCATGATCATGACCAAGCAAGAGAACCTTCGATAGATAAAGATTGGAGTCGAGAGGATGATCGGATTGAAAATGAAGAGGACAATGGCAGGGCACATAGTGAAGATGTGGACAGAGACCACAGCTTGGATTTGGATACAGATAGGAGGATGGATAGGACAAGTGATCCTGATAGAAGCTTTGACAAGGATAGAAACGAACAGACAAGAAGAAACTATGATTTGAATGTTACAGATCAACATAGCATGGATCTTTCATCAGATTCACATGGTAATTACGATCATCAGGTAGAAGATGAATTAGAGCAGTCAACTCATCGACTTGATCAACTGAAAAAGGAGGTTTCTCAGATGGAAGAGAGATTGGAAGAGAAAAAATTTCTTGTTAAGGATTTAGAGAAGAAGTCTAGGAAACTGGAGGAAGCACTGATCAATGCAAAGAAACATTCTTCATATCGTCAGATGCAGTTGACTAATTTGCATAAATGTTTTCTGCAAGTGAAAGATTGCACGGAAAGGCTCAAAACCAGTGAAAAAGAACTTCAGGCTCTAGTTGATGGCGCAGTGTTAGAGAATGATGCCGATGGTGTTGGCTTAAAGGATGGACAACCCACAAATGGCACTCTTGATGGACAGGGGCAACAACTGCAGAGAGAGGATGGTGGTTTTGCATTGCGGGTTGCACGACGATGGAGGAGCGTTGATGGTGGCTACGAGGCAAGACAACGGCGCGATGAAGGGGCGGAAGAGGCTGAGCGGCAGTGGGGCTACTGCATTGGACAGCTGACGGTGGCTGGGCTTCTGGCCATGGCTCACTTGACCCTTTTTTTTCCGTAA 1299 0.4665 MTMDDESSIYVGGLPYDATEQTIRSVFNLYGAILDVKIINDHRTRGKCYCFVTFTNPRSALDAINDMNGRTIDGRVVKVNGVRTRGGRSNFGRERNHHGGERNGDWDRGRDRDRGYDYDRDGHRNRNGDWDRDWDRDRDRSRDPDQDRDRRFEHMHDHDQAREPSIDKDWSREDDRIENEEDNGRAHSEDVDRDHSLDLDTDRRMDRTSDPDRSFDKDRNEQTRRNYDLNVTDQHSMDLSSDSHGNYDHQVEDELEQSTHRLDQLKKEVSQMEERLEEKKFLVKDLEKKSRKLEEALINAKKHSSYRQMQLTNLHKCFLQVKDCTERLKTSEKELQALVDGAVLENDADGVGLKDGQPTNGTLDGQGQQLQREDGGFALRVARRWRSVDGGYEARQRRDEGAEEAERQWGYCIGQLTVAGLLAMAHLTLFFP* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1899 432 MobiDBLite consensus disorder prediction 81 243 - -
Dod05g1899 432 MobiDBLite consensus disorder prediction 350 369 - -
Dod05g1899 432 CDD RRM_SF 9 80 - -
Dod05g1899 432 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 362 - -
Dod05g1899 432 Coils Coil 248 303 - -
Dod05g1899 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Dod05g1899 432 Gene3D - 248 351 - -
Dod05g1899 432 MobiDBLite consensus disorder prediction 88 228 - -
Dod05g1899 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Dod05g1899 432 SUPERFAMILY RNA-binding domain, RBD 4 113 IPR035979 GO:0003676
Dod05g1899 432 SMART rrm1_1 8 80 IPR000504 GO:0003723
Dod05g1899 432 Gene3D - 2 162 IPR012677 -
Dod05g1899 432 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 362 - -
Dod05g1899 432 MobiDBLite consensus disorder prediction 229 243 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1899 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 31.507 7.95e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1899 - - gmx:100816804 476.478